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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-119732046-T-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=119732046&ref=T&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 119732046,
      "ref": "T",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000378164.7",
      "consequences": [
        {
          "aa_ref": "K",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "c.3478A>C",
          "hgvs_p": "p.Lys1160Gln",
          "transcript": "NM_003184.4",
          "protein_id": "NP_003175.2",
          "transcript_support_level": null,
          "aa_start": 1160,
          "aa_end": null,
          "aa_length": 1199,
          "cds_start": 3478,
          "cds_end": null,
          "cds_length": 3600,
          "cdna_start": 3755,
          "cdna_end": null,
          "cdna_length": 5027,
          "mane_select": "ENST00000378164.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "c.3478A>C",
          "hgvs_p": "p.Lys1160Gln",
          "transcript": "ENST00000378164.7",
          "protein_id": "ENSP00000367406.2",
          "transcript_support_level": 1,
          "aa_start": 1160,
          "aa_end": null,
          "aa_length": 1199,
          "cds_start": 3478,
          "cds_end": null,
          "cds_length": 3600,
          "cdna_start": 3755,
          "cdna_end": null,
          "cdna_length": 5027,
          "mane_select": "NM_003184.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 27,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "c.3634A>C",
          "hgvs_p": "p.Lys1212Gln",
          "transcript": "ENST00000686879.1",
          "protein_id": "ENSP00000509206.1",
          "transcript_support_level": null,
          "aa_start": 1212,
          "aa_end": null,
          "aa_length": 1251,
          "cds_start": 3634,
          "cds_end": null,
          "cds_length": 3756,
          "cdna_start": 3925,
          "cdna_end": null,
          "cdna_length": 5016,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "c.3523A>C",
          "hgvs_p": "p.Lys1175Gln",
          "transcript": "ENST00000685235.1",
          "protein_id": "ENSP00000510174.1",
          "transcript_support_level": null,
          "aa_start": 1175,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": 3523,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": 3814,
          "cdna_end": null,
          "cdna_length": 4891,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "c.3367A>C",
          "hgvs_p": "p.Lys1123Gln",
          "transcript": "ENST00000688645.1",
          "protein_id": "ENSP00000509978.1",
          "transcript_support_level": null,
          "aa_start": 1123,
          "aa_end": null,
          "aa_length": 1162,
          "cds_start": 3367,
          "cds_end": null,
          "cds_length": 3489,
          "cdna_start": 3658,
          "cdna_end": null,
          "cdna_length": 4911,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "c.3364A>C",
          "hgvs_p": "p.Lys1122Gln",
          "transcript": "ENST00000523904.2",
          "protein_id": "ENSP00000430832.2",
          "transcript_support_level": 3,
          "aa_start": 1122,
          "aa_end": null,
          "aa_length": 1161,
          "cds_start": 3364,
          "cds_end": null,
          "cds_length": 3486,
          "cdna_start": 3634,
          "cdna_end": null,
          "cdna_length": 4887,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 27,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*1003A>C",
          "hgvs_p": null,
          "transcript": "ENST00000685202.1",
          "protein_id": "ENSP00000509214.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5187,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*2870A>C",
          "hgvs_p": null,
          "transcript": "ENST00000685503.1",
          "protein_id": "ENSP00000509198.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5202,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*3350A>C",
          "hgvs_p": null,
          "transcript": "ENST00000685663.1",
          "protein_id": "ENSP00000508988.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5237,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*4945A>C",
          "hgvs_p": null,
          "transcript": "ENST00000685684.1",
          "protein_id": "ENSP00000509441.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 7061,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*3179A>C",
          "hgvs_p": null,
          "transcript": "ENST00000685824.1",
          "protein_id": "ENSP00000510262.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4834,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 27,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*3196A>C",
          "hgvs_p": null,
          "transcript": "ENST00000685876.1",
          "protein_id": "ENSP00000510493.1",
          "transcript_support_level": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 5090,
          "mane_select": null,
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          "biotype": null,
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        },
        {
          "aa_ref": null,
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          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*3293A>C",
          "hgvs_p": null,
          "transcript": "ENST00000685993.1",
          "protein_id": "ENSP00000510102.1",
          "transcript_support_level": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cdna_length": 4946,
          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*2123A>C",
          "hgvs_p": null,
          "transcript": "ENST00000686098.1",
          "protein_id": "ENSP00000509102.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 23,
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          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*2897A>C",
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          "transcript": "ENST00000688037.1",
          "protein_id": "ENSP00000510169.1",
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          "cdna_length": 4586,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*3085A>C",
          "hgvs_p": null,
          "transcript": "ENST00000689919.1",
          "protein_id": "ENSP00000510768.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cdna_start": null,
          "cdna_end": null,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*2714A>C",
          "hgvs_p": null,
          "transcript": "ENST00000690808.1",
          "protein_id": "ENSP00000509791.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 4861,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*1890A>C",
          "hgvs_p": null,
          "transcript": "ENST00000690922.1",
          "protein_id": "ENSP00000509498.1",
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          "feature": null
        },
        {
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          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*3134A>C",
          "hgvs_p": null,
          "transcript": "ENST00000691880.1",
          "protein_id": "ENSP00000508515.1",
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          "cdna_length": 4840,
          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
          "hgvs_c": "n.*3344A>C",
          "hgvs_p": null,
          "transcript": "ENST00000692518.1",
          "protein_id": "ENSP00000508959.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5006,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF2",
          "gene_hgnc_id": 11536,
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      ],
      "gene_symbol": "TAF2",
      "gene_hgnc_id": 11536,
      "dbsnp": "rs755785500",
      "frequency_reference_population": 0.000022305634,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 36,
      "gnomad_exomes_af": 0.0000198393,
      "gnomad_genomes_af": 0.0000459939,
      "gnomad_exomes_ac": 29,
      "gnomad_genomes_ac": 7,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.2379351258277893,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.16,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.7745,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.3,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 6.289,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000378164.7",
          "gene_symbol": "TAF2",
          "hgnc_id": 11536,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.3478A>C",
          "hgvs_p": "p.Lys1160Gln"
        }
      ],
      "clinvar_disease": "Inborn genetic diseases,not provided,not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:3",
      "phenotype_combined": "not specified|Inborn genetic diseases|not provided",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}