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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-133061860-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=133061860&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "8",
"pos": 133061860,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000220616.9",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 48,
"intron_rank": 41,
"intron_rank_end": null,
"gene_symbol": "TG",
"gene_hgnc_id": 11764,
"hgvs_c": "c.7239+31837G>C",
"hgvs_p": null,
"transcript": "NM_003235.5",
"protein_id": "NP_003226.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2768,
"cds_start": -4,
"cds_end": null,
"cds_length": 8307,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8455,
"mane_select": "ENST00000220616.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 48,
"intron_rank": 41,
"intron_rank_end": null,
"gene_symbol": "TG",
"gene_hgnc_id": 11764,
"hgvs_c": "c.7239+31837G>C",
"hgvs_p": null,
"transcript": "ENST00000220616.9",
"protein_id": "ENSP00000220616.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2768,
"cds_start": -4,
"cds_end": null,
"cds_length": 8307,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8455,
"mane_select": "NM_003235.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.-40-1660C>G",
"hgvs_p": null,
"transcript": "NM_001045556.3",
"protein_id": "NP_001039021.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 276,
"cds_start": -4,
"cds_end": null,
"cds_length": 831,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2995,
"mane_select": "ENST00000338087.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.-40-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000338087.10",
"protein_id": "ENSP00000337548.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 276,
"cds_start": -4,
"cds_end": null,
"cds_length": 831,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2995,
"mane_select": "NM_001045556.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.12-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000395352.7",
"protein_id": "ENSP00000378759.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 293,
"cds_start": -4,
"cds_end": null,
"cds_length": 882,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2102,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "n.325-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000518565.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1217,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "n.171-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000518594.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 977,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "n.176-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000520106.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1033,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "n.102-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000522002.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 994,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "n.98-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000523224.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1214,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": 28,
"intron_rank_end": null,
"gene_symbol": "TG",
"gene_hgnc_id": 11764,
"hgvs_c": "n.*3452+31837G>C",
"hgvs_p": null,
"transcript": "ENST00000523756.5",
"protein_id": "ENSP00000428628.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 5065,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.-1580C>G",
"hgvs_p": null,
"transcript": "XM_047422108.1",
"protein_id": "XP_047278064.1",
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"aa_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "TG",
"gene_hgnc_id": 11764,
"hgvs_c": "c.2604+31837G>C",
"hgvs_p": null,
"transcript": "ENST00000519178.5",
"protein_id": "ENSP00000430523.1",
"transcript_support_level": 2,
"aa_start": null,
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"cds_start": -4,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 19,
"intron_rank": 12,
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"gene_symbol": "TG",
"gene_hgnc_id": 11764,
"hgvs_c": "c.1638+31837G>C",
"hgvs_p": null,
"transcript": "ENST00000519543.5",
"protein_id": "ENSP00000430430.1",
"transcript_support_level": 2,
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},
{
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],
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"gene_symbol": "SLA",
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"hgvs_c": "c.12-1660C>G",
"hgvs_p": null,
"transcript": "NM_001045557.3",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 1,
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"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.12-1660C>G",
"hgvs_p": null,
"transcript": "NM_001282964.2",
"protein_id": "NP_001269893.1",
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},
{
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],
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"gene_symbol": "SLA",
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"hgvs_c": "c.12-1660C>G",
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"transcript": "ENST00000517648.5",
"protein_id": "ENSP00000428559.1",
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"feature": null
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 1,
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"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.-263-10945C>G",
"hgvs_p": null,
"transcript": "NM_001282965.2",
"protein_id": "NP_001269894.1",
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"aa_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.-263-10945C>G",
"hgvs_p": null,
"transcript": "ENST00000524345.5",
"protein_id": "ENSP00000427928.1",
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},
{
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"strand": false,
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],
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"intron_rank": 1,
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},
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],
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"gene_symbol": "SLA",
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"hgvs_c": "c.-40-1660C>G",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.-40-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000521302.5",
"protein_id": "ENSP00000430184.1",
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"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLA",
"gene_hgnc_id": 10902,
"hgvs_c": "c.-40-1660C>G",
"hgvs_p": null,
"transcript": "ENST00000523610.5",
"protein_id": "ENSP00000428087.1",
"transcript_support_level": 4,
"aa_start": null,
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"aa_length": 39,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
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}