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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-143921941-G-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=143921941&ref=G&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 143921941,
      "ref": "G",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "ENST00000345136.8",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 32,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.7880C>A",
          "hgvs_p": "p.Pro2627His",
          "transcript": "NM_201384.3",
          "protein_id": "NP_958786.1",
          "transcript_support_level": null,
          "aa_start": 2627,
          "aa_end": null,
          "aa_length": 4547,
          "cds_start": 7880,
          "cds_end": null,
          "cds_length": 13644,
          "cdna_start": 8016,
          "cdna_end": null,
          "cdna_length": 14804,
          "mane_select": "ENST00000345136.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "P",
          "aa_alt": "H",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 32,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.7880C>A",
          "hgvs_p": "p.Pro2627His",
          "transcript": "ENST00000345136.8",
          "protein_id": "ENSP00000344848.3",
          "transcript_support_level": 1,
          "aa_start": 2627,
          "aa_end": null,
          "aa_length": 4547,
          "cds_start": 7880,
          "cds_end": null,
          "cds_length": 13644,
          "cdna_start": 8016,
          "cdna_end": null,
          "cdna_length": 14804,
          "mane_select": "NM_201384.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "P",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 32,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.7838C>A",
          "hgvs_p": "p.Pro2613His",
          "transcript": "NM_201378.4",
          "protein_id": "NP_958780.1",
          "transcript_support_level": null,
          "aa_start": 2613,
          "aa_end": null,
          "aa_length": 4533,
          "cds_start": 7838,
          "cds_end": null,
          "cds_length": 13602,
          "cdna_start": 7895,
          "cdna_end": null,
          "cdna_length": 14683,
          "mane_select": null,
          "mane_plus": "ENST00000356346.7",
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "P",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 32,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.7838C>A",
          "hgvs_p": "p.Pro2613His",
          "transcript": "ENST00000356346.7",
          "protein_id": "ENSP00000348702.3",
          "transcript_support_level": 1,
          "aa_start": 2613,
          "aa_end": null,
          "aa_length": 4533,
          "cds_start": 7838,
          "cds_end": null,
          "cds_length": 13602,
          "cdna_start": 7895,
          "cdna_end": null,
          "cdna_length": 14683,
          "mane_select": null,
          "mane_plus": "NM_201378.4",
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "P",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 32,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.8291C>A",
          "hgvs_p": "p.Pro2764His",
          "transcript": "ENST00000322810.8",
          "protein_id": "ENSP00000323856.4",
          "transcript_support_level": 1,
          "aa_start": 2764,
          "aa_end": null,
          "aa_length": 4684,
          "cds_start": 8291,
          "cds_end": null,
          "cds_length": 14055,
          "cdna_start": 8461,
          "cdna_end": null,
          "cdna_length": 15249,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "P",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 33,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.7961C>A",
          "hgvs_p": "p.Pro2654His",
          "transcript": "ENST00000436759.6",
          "protein_id": "ENSP00000388180.2",
          "transcript_support_level": 1,
          "aa_start": 2654,
          "aa_end": null,
          "aa_length": 4574,
          "cds_start": 7961,
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          "cdna_start": 7999,
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          "cdna_length": 14787,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 32,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.7892C>A",
          "hgvs_p": "p.Pro2631His",
          "transcript": "ENST00000357649.6",
          "protein_id": "ENSP00000350277.2",
          "transcript_support_level": 1,
          "aa_start": 2631,
          "aa_end": null,
          "aa_length": 4551,
          "cds_start": 7892,
          "cds_end": null,
          "cds_length": 13656,
          "cdna_start": 7901,
          "cdna_end": null,
          "cdna_length": 14689,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "P",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 32,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.7880C>A",
          "hgvs_p": "p.Pro2627His",
          "transcript": "ENST00000354589.7",
          "protein_id": "ENSP00000346602.3",
          "transcript_support_level": 1,
          "aa_start": 2627,
          "aa_end": null,
          "aa_length": 4547,
          "cds_start": 7880,
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          "cds_length": 13644,
          "cdna_start": 7948,
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          "mane_select": null,
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        },
        {
          "aa_ref": "P",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 32,
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          "exon_count": 32,
          "intron_rank": null,
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          "gene_symbol": "PLEC",
          "gene_hgnc_id": 9069,
          "hgvs_c": "c.7814C>A",
          "hgvs_p": "p.Pro2605His",
          "transcript": "ENST00000354958.6",
          "protein_id": "ENSP00000347044.2",
          "transcript_support_level": 1,
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        {
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          "exon_count": 32,
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          "gene_symbol": "PLEC",
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          "hgvs_c": "c.7784C>A",
          "hgvs_p": "p.Pro2595His",
          "transcript": "ENST00000398774.6",
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