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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-144106919-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=144106919&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 144106919,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_032272.5",
      "consequences": [
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "NM_032272.5",
          "protein_id": "NP_115648.2",
          "transcript_support_level": null,
          "aa_start": 235,
          "aa_end": null,
          "aa_length": 256,
          "cds_start": 705,
          "cds_end": null,
          "cds_length": 771,
          "cdna_start": 1147,
          "cdna_end": null,
          "cdna_length": 1715,
          "mane_select": "ENST00000322428.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_032272.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000322428.10",
          "protein_id": "ENSP00000318604.5",
          "transcript_support_level": 1,
          "aa_start": 235,
          "aa_end": null,
          "aa_length": 256,
          "cds_start": 705,
          "cds_end": null,
          "cds_length": 771,
          "cdna_start": 1147,
          "cdna_end": null,
          "cdna_length": 1715,
          "mane_select": "NM_032272.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000322428.10"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.795C>G",
          "hgvs_p": "p.Ser265Arg",
          "transcript": "ENST00000876672.1",
          "protein_id": "ENSP00000546731.1",
          "transcript_support_level": null,
          "aa_start": 265,
          "aa_end": null,
          "aa_length": 295,
          "cds_start": 795,
          "cds_end": null,
          "cds_length": 888,
          "cdna_start": 1219,
          "cdna_end": null,
          "cdna_length": 1814,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876672.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.795C>G",
          "hgvs_p": "p.Ser265Arg",
          "transcript": "ENST00000534585.5",
          "protein_id": "ENSP00000433979.1",
          "transcript_support_level": 5,
          "aa_start": 265,
          "aa_end": null,
          "aa_length": 286,
          "cds_start": 795,
          "cds_end": null,
          "cds_length": 861,
          "cdna_start": 1186,
          "cdna_end": null,
          "cdna_length": 1754,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000534585.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.795C>G",
          "hgvs_p": "p.Ser265Arg",
          "transcript": "ENST00000876670.1",
          "protein_id": "ENSP00000546729.1",
          "transcript_support_level": null,
          "aa_start": 265,
          "aa_end": null,
          "aa_length": 286,
          "cds_start": 795,
          "cds_end": null,
          "cds_length": 861,
          "cdna_start": 1233,
          "cdna_end": null,
          "cdna_length": 1798,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876670.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.795C>G",
          "hgvs_p": "p.Ser265Arg",
          "transcript": "ENST00000876671.1",
          "protein_id": "ENSP00000546730.1",
          "transcript_support_level": null,
          "aa_start": 265,
          "aa_end": null,
          "aa_length": 286,
          "cds_start": 795,
          "cds_end": null,
          "cds_length": 861,
          "cdna_start": 2000,
          "cdna_end": null,
          "cdna_length": 2569,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876671.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.795C>G",
          "hgvs_p": "p.Ser265Arg",
          "transcript": "ENST00000964344.1",
          "protein_id": "ENSP00000634403.1",
          "transcript_support_level": null,
          "aa_start": 265,
          "aa_end": null,
          "aa_length": 286,
          "cds_start": 795,
          "cds_end": null,
          "cds_length": 861,
          "cdna_start": 966,
          "cdna_end": null,
          "cdna_length": 1535,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000964344.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000876667.1",
          "protein_id": "ENSP00000546726.1",
          "transcript_support_level": null,
          "aa_start": 235,
          "aa_end": null,
          "aa_length": 265,
          "cds_start": 705,
          "cds_end": null,
          "cds_length": 798,
          "cdna_start": 1553,
          "cdna_end": null,
          "cdna_length": 2155,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876667.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.711C>G",
          "hgvs_p": "p.Ser237Arg",
          "transcript": "ENST00000876673.1",
          "protein_id": "ENSP00000546732.1",
          "transcript_support_level": null,
          "aa_start": 237,
          "aa_end": null,
          "aa_length": 258,
          "cds_start": 711,
          "cds_end": null,
          "cds_length": 777,
          "cdna_start": 1122,
          "cdna_end": null,
          "cdna_length": 1689,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876673.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000532522.5",
          "protein_id": "ENSP00000436720.1",
          "transcript_support_level": 5,
          "aa_start": 235,
          "aa_end": null,
          "aa_length": 256,
          "cds_start": 705,
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          "cds_length": 771,
          "cdna_start": 924,
          "cdna_end": null,
          "cdna_length": 1098,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000532522.5"
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
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          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000715465.1",
          "protein_id": "ENSP00000520454.1",
          "transcript_support_level": null,
          "aa_start": 235,
          "aa_end": null,
          "aa_length": 256,
          "cds_start": 705,
          "cds_end": null,
          "cds_length": 771,
          "cdna_start": 1188,
          "cdna_end": null,
          "cdna_length": 1756,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "S",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 7,
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          "intron_rank": null,
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          "gene_symbol": "MAF1",
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          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000876665.1",
          "protein_id": "ENSP00000546724.1",
          "transcript_support_level": null,
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          "cds_start": 705,
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          "cdna_start": 1229,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000876666.1",
          "protein_id": "ENSP00000546725.1",
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          "cdna_start": 1211,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "S",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 7,
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          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000876668.1",
          "protein_id": "ENSP00000546727.1",
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        {
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          "gene_symbol": "MAF1",
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          "hgvs_c": "c.705C>G",
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          "transcript": "ENST00000876674.1",
          "protein_id": "ENSP00000546733.1",
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          "biotype": "protein_coding",
          "feature": "ENST00000876674.1"
        },
        {
          "aa_ref": "S",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          "exon_count": 8,
          "intron_rank": null,
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          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000876675.1",
          "protein_id": "ENSP00000546734.1",
          "transcript_support_level": null,
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        {
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          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
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          "transcript": "ENST00000876676.1",
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        {
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          "gene_symbol": "MAF1",
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "S",
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          "protein_coding": true,
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          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAF1",
          "gene_hgnc_id": 24966,
          "hgvs_c": "c.705C>G",
          "hgvs_p": "p.Ser235Arg",
          "transcript": "ENST00000964350.1",
          "protein_id": "ENSP00000634409.1",
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          "cdna_length": 1431,
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      "splice_score_selected": 0.07000000029802322,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.58,
      "bayesdelnoaf_prediction": "Benign",
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      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.07,
      "spliceai_max_prediction": "Benign",
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      "acmg_by_gene": [
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            "BP4_Strong"
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          "verdict": "Likely_benign",
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          "hgnc_id": 24966,
          "effects": [
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        {
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            "BP4_Strong"
          ],
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          "transcript": "ENST00000533184.1",
          "gene_symbol": "SHARPIN",
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          "effects": [
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      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.