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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-144511446-CA-TT (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=144511446&ref=CA&alt=TT&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [],
"effects": [
"missense_variant"
],
"gene_symbol": "RECQL4",
"hgnc_id": 9949,
"hgvs_c": "c.3686_3687delTGinsAA",
"hgvs_p": "p.Leu1229Gln",
"inheritance_mode": "AR,AD",
"pathogenic_score": 0,
"score": 0,
"transcript": "NM_001413019.1",
"verdict": "Uncertain_significance"
},
{
"benign_score": 0,
"criteria": [],
"effects": [
"downstream_gene_variant"
],
"gene_symbol": "SLC33A2",
"hgnc_id": 25157,
"hgvs_c": "c.*282_*283delCAinsTT",
"hgvs_p": null,
"inheritance_mode": "AR",
"pathogenic_score": 0,
"score": 0,
"transcript": "NM_138431.3",
"verdict": "Uncertain_significance"
},
{
"benign_score": 0,
"criteria": [],
"effects": [
"downstream_gene_variant"
],
"gene_symbol": "MFSD3",
"hgnc_id": 25157,
"hgvs_c": "c.*282_*283delCAinsTT",
"hgvs_p": null,
"inheritance_mode": "AR",
"pathogenic_score": 0,
"score": 0,
"transcript": "ENST00000301327.5",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "",
"acmg_score": 0,
"allele_count_reference_population": 0,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "TT",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": null,
"bayesdelnoaf_score": null,
"chr": "8",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": null,
"computational_score_selected": null,
"computational_source_selected": null,
"consequences": [
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1208,
"aa_ref": "L",
"aa_start": 1204,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3819,
"cdna_start": 3661,
"cds_end": null,
"cds_length": 3627,
"cds_start": 3611,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_004260.4",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3611_3612delTGinsAA",
"hgvs_p": "p.Leu1204Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000617875.6",
"protein_coding": true,
"protein_id": "NP_004251.4",
"strand": false,
"transcript": "NM_004260.4",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1208,
"aa_ref": "L",
"aa_start": 1204,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 3819,
"cdna_start": 3661,
"cds_end": null,
"cds_length": 3627,
"cds_start": 3611,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000617875.6",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3611_3612delTGinsAA",
"hgvs_p": "p.Leu1204Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_004260.4",
"protein_coding": true,
"protein_id": "ENSP00000482313.2",
"strand": false,
"transcript": "ENST00000617875.6",
"transcript_support_level": 1
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 851,
"aa_ref": "L",
"aa_start": 847,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3896,
"cdna_start": 3738,
"cds_end": null,
"cds_length": 2556,
"cds_start": 2540,
"consequences": [
"missense_variant"
],
"exon_count": 20,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000621189.4",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.2540_2541delTGinsAA",
"hgvs_p": "p.Leu847Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000483145.1",
"strand": false,
"transcript": "ENST00000621189.4",
"transcript_support_level": 1
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1233,
"aa_ref": "L",
"aa_start": 1229,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3894,
"cdna_start": 3736,
"cds_end": null,
"cds_length": 3702,
"cds_start": 3686,
"consequences": [
"missense_variant"
],
"exon_count": 20,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413019.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3686_3687delTGinsAA",
"hgvs_p": "p.Leu1229Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399948.1",
"strand": false,
"transcript": "NM_001413019.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1211,
"aa_ref": "L",
"aa_start": 1207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3828,
"cdna_start": 3670,
"cds_end": null,
"cds_length": 3636,
"cds_start": 3620,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413036.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3620_3621delTGinsAA",
"hgvs_p": "p.Leu1207Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399965.1",
"strand": false,
"transcript": "NM_001413036.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1198,
"aa_ref": "L",
"aa_start": 1194,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3789,
"cdna_start": 3631,
"cds_end": null,
"cds_length": 3597,
"cds_start": 3581,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413039.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3581_3582delTGinsAA",
"hgvs_p": "p.Leu1194Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399968.1",
"strand": false,
"transcript": "NM_001413039.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1177,
"aa_ref": "L",
"aa_start": 1173,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3726,
"cdna_start": 3569,
"cds_end": null,
"cds_length": 3534,
"cds_start": 3518,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000971710.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3518_3519delTGinsAA",
"hgvs_p": "p.Leu1173Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000641769.1",
"strand": false,
"transcript": "ENST00000971710.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1176,
"aa_ref": "L",
"aa_start": 1172,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3723,
"cdna_start": 3565,
"cds_end": null,
"cds_length": 3531,
"cds_start": 3515,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413020.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3515_3516delTGinsAA",
"hgvs_p": "p.Leu1172Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399949.1",
"strand": false,
"transcript": "NM_001413020.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1165,
"aa_ref": "L",
"aa_start": 1161,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3690,
"cdna_start": 3532,
"cds_end": null,
"cds_length": 3498,
"cds_start": 3482,
"consequences": [
"missense_variant"
],
"exon_count": 19,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413025.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3482_3483delTGinsAA",
"hgvs_p": "p.Leu1161Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399954.1",
"strand": false,
"transcript": "NM_001413025.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1164,
"aa_ref": "L",
"aa_start": 1160,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3687,
"cdna_start": 3529,
"cds_end": null,
"cds_length": 3495,
"cds_start": 3479,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413033.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3479_3480delTGinsAA",
"hgvs_p": "p.Leu1160Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399962.1",
"strand": false,
"transcript": "NM_001413033.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1164,
"aa_ref": "L",
"aa_start": 1160,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3644,
"cdna_start": 3497,
"cds_end": null,
"cds_length": 3495,
"cds_start": 3479,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000887977.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3479_3480delTGinsAA",
"hgvs_p": "p.Leu1160Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000558036.1",
"strand": false,
"transcript": "ENST00000887977.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1154,
"aa_ref": "L",
"aa_start": 1150,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3627,
"cdna_start": 3470,
"cds_end": null,
"cds_length": 3465,
"cds_start": 3449,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000922086.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3449_3450delTGinsAA",
"hgvs_p": "p.Leu1150Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000592145.1",
"strand": false,
"transcript": "ENST00000922086.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1142,
"aa_ref": "L",
"aa_start": 1138,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3621,
"cdna_start": 3463,
"cds_end": null,
"cds_length": 3429,
"cds_start": 3413,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413018.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3413_3414delTGinsAA",
"hgvs_p": "p.Leu1138Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399947.1",
"strand": false,
"transcript": "NM_001413018.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1110,
"aa_ref": "L",
"aa_start": 1106,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3525,
"cdna_start": 3367,
"cds_end": null,
"cds_length": 3333,
"cds_start": 3317,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413017.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3317_3318delTGinsAA",
"hgvs_p": "p.Leu1106Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399946.1",
"strand": false,
"transcript": "NM_001413017.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1091,
"aa_ref": "L",
"aa_start": 1087,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3468,
"cdna_start": 3310,
"cds_end": null,
"cds_length": 3276,
"cds_start": 3260,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413029.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3260_3261delTGinsAA",
"hgvs_p": "p.Leu1087Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399958.1",
"strand": false,
"transcript": "NM_001413029.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1060,
"aa_ref": "L",
"aa_start": 1056,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3344,
"cdna_start": 3192,
"cds_end": null,
"cds_length": 3183,
"cds_start": 3167,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000922087.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.3167_3168delTGinsAA",
"hgvs_p": "p.Leu1056Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000592146.1",
"strand": false,
"transcript": "ENST00000922087.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 876,
"aa_ref": "L",
"aa_start": 872,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3959,
"cdna_start": 3801,
"cds_end": null,
"cds_length": 2631,
"cds_start": 2615,
"consequences": [
"missense_variant"
],
"exon_count": 19,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413023.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.2615_2616delTGinsAA",
"hgvs_p": "p.Leu872Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399952.1",
"strand": false,
"transcript": "NM_001413023.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 854,
"aa_ref": "L",
"aa_start": 850,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3955,
"cdna_start": 3797,
"cds_end": null,
"cds_length": 2565,
"cds_start": 2549,
"consequences": [
"missense_variant"
],
"exon_count": 19,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413041.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.2549_2550delTGinsAA",
"hgvs_p": "p.Leu850Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399970.1",
"strand": false,
"transcript": "NM_001413041.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 851,
"aa_ref": "L",
"aa_start": 847,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3533,
"cdna_start": 3375,
"cds_end": null,
"cds_length": 2556,
"cds_start": 2540,
"consequences": [
"missense_variant"
],
"exon_count": 20,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413021.1",
"gene_hgnc_id": 9949,
"gene_symbol": "RECQL4",
"hgvs_c": "c.2540_2541delTGinsAA",
"hgvs_p": "p.Leu847Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001399950.1",
"strand": false,
"transcript": "NM_001413021.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 851,
"aa_ref": "L",
"aa_start": 847,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3884,
"cdna_start": 3726,
"cds_end": null,
"cds_length": 2556,
"cds_start": 2540,
"consequences": [
"missense_variant"
],
"exon_count": 20,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001413022.1",
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