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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-144840646-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=144840646&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "8",
"pos": 144840646,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000532777.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.248-709C>T",
"hgvs_p": null,
"transcript": "NM_003416.4",
"protein_id": "NP_003407.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 686,
"cds_start": -4,
"cds_end": null,
"cds_length": 2061,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2760,
"mane_select": "ENST00000532777.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.248-709C>T",
"hgvs_p": null,
"transcript": "ENST00000532777.6",
"protein_id": "ENSP00000432641.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 686,
"cds_start": -4,
"cds_end": null,
"cds_length": 2061,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2760,
"mane_select": "NM_003416.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.281-709C>T",
"hgvs_p": null,
"transcript": "ENST00000446747.7",
"protein_id": "ENSP00000393260.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 697,
"cds_start": -4,
"cds_end": null,
"cds_length": 2094,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2794,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.248-709C>T",
"hgvs_p": null,
"transcript": "ENST00000528372.5",
"protein_id": "ENSP00000432724.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 686,
"cds_start": -4,
"cds_end": null,
"cds_length": 2061,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2905,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "n.3776-709C>T",
"hgvs_p": null,
"transcript": "ENST00000528017.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5641,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COMMD5",
"gene_hgnc_id": 17902,
"hgvs_c": "n.2131G>A",
"hgvs_p": null,
"transcript": "XR_002956628.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4799,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COMMD5",
"gene_hgnc_id": 17902,
"hgvs_c": "n.2156G>A",
"hgvs_p": null,
"transcript": "XR_428379.4",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4824,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COMMD5",
"gene_hgnc_id": 17902,
"hgvs_c": "n.2002G>A",
"hgvs_p": null,
"transcript": "XR_928321.4",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4670,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COMMD5",
"gene_hgnc_id": 17902,
"hgvs_c": "n.2615G>A",
"hgvs_p": null,
"transcript": "XR_928323.4",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5283,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.347-709C>T",
"hgvs_p": null,
"transcript": "ENST00000533314.6",
"protein_id": "ENSP00000433630.2",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 719,
"cds_start": -4,
"cds_end": null,
"cds_length": 2160,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2840,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.311-709C>T",
"hgvs_p": null,
"transcript": "NM_001349809.2",
"protein_id": "NP_001336738.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 707,
"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
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"hgvs_c": "c.299-709C>T",
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"transcript": "NM_001349806.2",
"protein_id": "NP_001336735.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 5,
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"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.296-709C>T",
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"transcript": "NM_001349808.2",
"protein_id": "NP_001336737.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 5,
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"gene_symbol": "ZNF7",
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"hgvs_c": "c.281-709C>T",
"hgvs_p": null,
"transcript": "NM_001282795.2",
"protein_id": "NP_001269724.1",
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},
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],
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"gene_symbol": "ZNF7",
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"transcript": "NM_001349807.2",
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"feature": null
},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 4,
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"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.245-709C>T",
"hgvs_p": null,
"transcript": "ENST00000527218.6",
"protein_id": "ENSP00000433656.2",
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},
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],
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"gene_symbol": "ZNF7",
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"hgvs_c": "c.-41-709C>T",
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"transcript": "NM_001282797.2",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
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"hgvs_c": "c.-41-709C>T",
"hgvs_p": null,
"transcript": "NM_001349805.2",
"protein_id": "NP_001336734.1",
"transcript_support_level": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
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"hgvs_c": "c.-41-709C>T",
"hgvs_p": null,
"transcript": "ENST00000544249.2",
"protein_id": "ENSP00000439424.1",
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},
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"strand": true,
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],
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"intron_rank": 4,
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"gene_symbol": "ZNF7",
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},
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"strand": true,
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],
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"intron_rank": 4,
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"gene_symbol": "ZNF7",
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"hgvs_c": "c.280+3139C>T",
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"transcript": "ENST00000325217.10",
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},
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"strand": true,
"consequences": [
"intron_variant"
],
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"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.247+3139C>T",
"hgvs_p": null,
"transcript": "NM_001282796.2",
"protein_id": "NP_001269725.1",
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZNF7",
"gene_hgnc_id": 13139,
"hgvs_c": "c.247+3139C>T",
"hgvs_p": null,
"transcript": "ENST00000525266.5",
"protein_id": "ENSP00000435252.1",
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": 148,
"cds_start": -4,
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},
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