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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-17247340-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=17247340&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 17247340,
      "ref": "G",
      "alt": "C",
      "effect": "synonymous_variant",
      "transcript": "NM_152415.3",
      "consequences": [
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "NM_152415.3",
          "protein_id": "NP_689628.2",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000324849.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_152415.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000324849.9",
          "protein_id": "ENSP00000318629.4",
          "transcript_support_level": 1,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_152415.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000324849.9"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000521829.5",
          "protein_id": "ENSP00000429680.1",
          "transcript_support_level": 1,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 372,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1119,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000521829.5"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000967262.1",
          "protein_id": "ENSP00000637321.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 433,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1302,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000967262.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000967265.1",
          "protein_id": "ENSP00000637324.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 402,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1209,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000967265.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "NM_001363173.2",
          "protein_id": "NP_001350102.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001363173.2"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000880479.1",
          "protein_id": "ENSP00000550538.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000880479.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000880482.1",
          "protein_id": "ENSP00000550541.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000880482.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000880486.1",
          "protein_id": "ENSP00000550545.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000880486.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000967263.1",
          "protein_id": "ENSP00000637322.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000967263.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000967264.1",
          "protein_id": "ENSP00000637323.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000967264.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "NM_001363167.1",
          "protein_id": "NP_001350096.1",
          "transcript_support_level": null,
          "aa_start": 32,
          "aa_end": null,
          "aa_length": 391,
          "cds_start": 96,
          "cds_end": null,
          "cds_length": 1176,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001363167.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
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          "exon_count": 12,
          "intron_rank": null,
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          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000880480.1",
          "protein_id": "ENSP00000550539.1",
          "transcript_support_level": null,
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          "aa_length": 391,
          "cds_start": 96,
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          "cds_length": 1176,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000880487.1",
          "protein_id": "ENSP00000550546.1",
          "transcript_support_level": null,
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          "cds_start": 96,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        {
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          "canonical": false,
          "protein_coding": true,
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          ],
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          "intron_rank": null,
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          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000967268.1",
          "protein_id": "ENSP00000637327.1",
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          "aa_length": 391,
          "cds_start": 96,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000967268.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 1,
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          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000967269.1",
          "protein_id": "ENSP00000637328.1",
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          "aa_start": 32,
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          "aa_length": 384,
          "cds_start": 96,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 1,
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          "exon_count": 11,
          "intron_rank": null,
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          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000967270.1",
          "protein_id": "ENSP00000637329.1",
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        },
        {
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          "intron_rank": null,
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          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
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          "transcript": "NM_001145152.2",
          "protein_id": "NP_001138624.1",
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "L",
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          ],
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          "gene_symbol": "VPS37A",
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          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000880485.1",
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000880485.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu",
          "transcript": "ENST00000880481.1",
          "protein_id": "ENSP00000550540.1",
          "transcript_support_level": null,
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          "cds_start": 96,
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          "cdna_start": null,
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          "cdna_length": null,
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        {
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          "gene_symbol": "VPS37A",
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          "hgvs_c": "n.383G>C",
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        {
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          "gene_symbol": "VPS37A",
          "gene_hgnc_id": 24928,
          "hgvs_c": "n.383G>C",
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          "transcript": "XR_007060700.1",
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          "biotype": "pseudogene",
          "feature": "XR_007060700.1"
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      ],
      "gene_symbol": "VPS37A",
      "gene_hgnc_id": 24928,
      "dbsnp": "rs199577037",
      "frequency_reference_population": 0.00032490675,
      "hom_count_reference_population": 4,
      "allele_count_reference_population": 495,
      "gnomad_exomes_af": 0.000338649,
      "gnomad_genomes_af": 0.000196666,
      "gnomad_exomes_ac": 466,
      "gnomad_genomes_ac": 29,
      "gnomad_exomes_homalt": 4,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.6200000047683716,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.62,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.431,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -11,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Moderate,BP7,BS2",
      "acmg_by_gene": [
        {
          "score": -11,
          "benign_score": 11,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Moderate",
            "BP7",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_152415.3",
          "gene_symbol": "VPS37A",
          "hgnc_id": 24928,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.96G>C",
          "hgvs_p": "p.Leu32Leu"
        },
        {
          "score": -10,
          "benign_score": 10,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Moderate",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000851025.1",
          "gene_symbol": "CNOT7",
          "hgnc_id": 14101,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.-96+144C>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Hereditary spastic paraplegia 53,VPS37A-related disorder",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "Hereditary spastic paraplegia 53|VPS37A-related disorder",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}