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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-27879749-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=27879749&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "8",
"pos": 27879749,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_173833.6",
"consequences": [
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1171A>G",
"hgvs_p": "p.Met391Val",
"transcript": "NM_173833.6",
"protein_id": "NP_776194.2",
"transcript_support_level": null,
"aa_start": 391,
"aa_end": null,
"aa_length": 495,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1488,
"cdna_start": 1603,
"cdna_end": null,
"cdna_length": 3971,
"mane_select": "ENST00000354914.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_173833.6"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1171A>G",
"hgvs_p": "p.Met391Val",
"transcript": "ENST00000354914.8",
"protein_id": "ENSP00000346990.3",
"transcript_support_level": 2,
"aa_start": 391,
"aa_end": null,
"aa_length": 495,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1488,
"cdna_start": 1603,
"cdna_end": null,
"cdna_length": 3971,
"mane_select": "NM_173833.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000354914.8"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.496A>G",
"hgvs_p": "p.Met166Val",
"transcript": "ENST00000380385.6",
"protein_id": "ENSP00000369746.2",
"transcript_support_level": 1,
"aa_start": 166,
"aa_end": null,
"aa_length": 270,
"cds_start": 496,
"cds_end": null,
"cds_length": 813,
"cdna_start": 919,
"cdna_end": null,
"cdna_length": 2934,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000380385.6"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1171A>G",
"hgvs_p": "p.Met391Val",
"transcript": "ENST00000881549.1",
"protein_id": "ENSP00000551608.1",
"transcript_support_level": null,
"aa_start": 391,
"aa_end": null,
"aa_length": 495,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1488,
"cdna_start": 1689,
"cdna_end": null,
"cdna_length": 3725,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881549.1"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1171A>G",
"hgvs_p": "p.Met391Val",
"transcript": "ENST00000970495.1",
"protein_id": "ENSP00000640554.1",
"transcript_support_level": null,
"aa_start": 391,
"aa_end": null,
"aa_length": 495,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1488,
"cdna_start": 1755,
"cdna_end": null,
"cdna_length": 4119,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970495.1"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1114A>G",
"hgvs_p": "p.Met372Val",
"transcript": "ENST00000881551.1",
"protein_id": "ENSP00000551610.1",
"transcript_support_level": null,
"aa_start": 372,
"aa_end": null,
"aa_length": 476,
"cds_start": 1114,
"cds_end": null,
"cds_length": 1431,
"cdna_start": 1503,
"cdna_end": null,
"cdna_length": 3539,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881551.1"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1090A>G",
"hgvs_p": "p.Met364Val",
"transcript": "ENST00000881550.1",
"protein_id": "ENSP00000551609.1",
"transcript_support_level": null,
"aa_start": 364,
"aa_end": null,
"aa_length": 468,
"cds_start": 1090,
"cds_end": null,
"cds_length": 1407,
"cdna_start": 1495,
"cdna_end": null,
"cdna_length": 3531,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881550.1"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1042A>G",
"hgvs_p": "p.Met348Val",
"transcript": "NM_001413201.1",
"protein_id": "NP_001400130.1",
"transcript_support_level": null,
"aa_start": 348,
"aa_end": null,
"aa_length": 452,
"cds_start": 1042,
"cds_end": null,
"cds_length": 1359,
"cdna_start": 1474,
"cdna_end": null,
"cdna_length": 3842,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001413201.1"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1042A>G",
"hgvs_p": "p.Met348Val",
"transcript": "ENST00000881547.1",
"protein_id": "ENSP00000551606.1",
"transcript_support_level": null,
"aa_start": 348,
"aa_end": null,
"aa_length": 452,
"cds_start": 1042,
"cds_end": null,
"cds_length": 1359,
"cdna_start": 1482,
"cdna_end": null,
"cdna_length": 3847,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881547.1"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.991A>G",
"hgvs_p": "p.Met331Val",
"transcript": "ENST00000970496.1",
"protein_id": "ENSP00000640555.1",
"transcript_support_level": null,
"aa_start": 331,
"aa_end": null,
"aa_length": 435,
"cds_start": 991,
"cds_end": null,
"cds_length": 1308,
"cdna_start": 1427,
"cdna_end": null,
"cdna_length": 3793,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970496.1"
},
{
"aa_ref": "M",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.367A>G",
"hgvs_p": "p.Met123Val",
"transcript": "NM_001413203.1",
"protein_id": "NP_001400132.1",
"transcript_support_level": null,
"aa_start": 123,
"aa_end": null,
"aa_length": 227,
"cds_start": 367,
"cds_end": null,
"cds_length": 684,
"cdna_start": 1156,
"cdna_end": null,
"cdna_length": 3524,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001413203.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"hgvs_c": "c.1154-7679A>G",
"hgvs_p": null,
"transcript": "ENST00000881548.1",
"protein_id": "ENSP00000551607.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 429,
"cds_start": null,
"cds_end": null,
"cds_length": 1290,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3748,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881548.1"
}
],
"gene_symbol": "SCARA5",
"gene_hgnc_id": 28701,
"dbsnp": null,
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.038088589906692505,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.017,
"revel_prediction": "Benign",
"alphamissense_score": 0.0812,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.77,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.499,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_173833.6",
"gene_symbol": "SCARA5",
"hgnc_id": 28701,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1171A>G",
"hgvs_p": "p.Met391Val"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}