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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-28553555-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=28553555&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "8",
"pos": 28553555,
"ref": "T",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000240093.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1553+1804T>A",
"hgvs_p": null,
"transcript": "NM_017412.4",
"protein_id": "NP_059108.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 666,
"cds_start": -4,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13770,
"mane_select": "ENST00000240093.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1553+1804T>A",
"hgvs_p": null,
"transcript": "ENST00000240093.8",
"protein_id": "ENSP00000240093.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 666,
"cds_start": -4,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13770,
"mane_select": "NM_017412.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1622+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412905.1",
"protein_id": "NP_001399834.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 689,
"cds_start": -4,
"cds_end": null,
"cds_length": 2070,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13839,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1622+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412917.1",
"protein_id": "NP_001399846.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 689,
"cds_start": -4,
"cds_end": null,
"cds_length": 2070,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13793,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1553+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412911.1",
"protein_id": "NP_001399840.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 666,
"cds_start": -4,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13765,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1553+1804T>A",
"hgvs_p": null,
"transcript": "NM_145866.2",
"protein_id": "NP_665873.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 666,
"cds_start": -4,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13724,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1553+1804T>A",
"hgvs_p": null,
"transcript": "ENST00000537916.2",
"protein_id": "ENSP00000437489.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 666,
"cds_start": -4,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13740,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1370+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412927.1",
"protein_id": "NP_001399856.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 605,
"cds_start": -4,
"cds_end": null,
"cds_length": 1818,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13617,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1367+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412924.1",
"protein_id": "NP_001399853.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 604,
"cds_start": -4,
"cds_end": null,
"cds_length": 1815,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13892,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1367+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412925.1",
"protein_id": "NP_001399854.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 604,
"cds_start": -4,
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"cds_length": 1815,
"cdna_start": null,
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"cdna_length": 13938,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1352+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412906.1",
"protein_id": "NP_001399835.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 599,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 6,
"intron_rank": 4,
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"gene_symbol": "FZD3",
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"hgvs_c": "c.1199+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412922.1",
"protein_id": "NP_001399851.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 5,
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"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1172+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412912.1",
"protein_id": "NP_001399841.1",
"transcript_support_level": null,
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},
{
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"strand": true,
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],
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"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.1172+1804T>A",
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"transcript": "NM_001412913.1",
"protein_id": "NP_001399842.1",
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},
{
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"consequences": [
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],
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"exon_count": 7,
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"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.980+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412909.1",
"protein_id": "NP_001399838.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 6,
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"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.980+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412910.1",
"protein_id": "NP_001399839.1",
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},
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],
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"exon_count": 5,
"intron_rank": 3,
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"gene_symbol": "FZD3",
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"hgvs_c": "c.980+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412919.1",
"protein_id": "NP_001399848.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.722+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412921.1",
"protein_id": "NP_001399850.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FZD3",
"gene_hgnc_id": 4041,
"hgvs_c": "c.140+1804T>A",
"hgvs_p": null,
"transcript": "NM_001412908.1",
"protein_id": "NP_001399837.1",
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},
{
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"strand": false,
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "ENSG00000290005",
"gene_hgnc_id": null,
"hgvs_c": "n.156+8264A>T",
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"transcript": "ENST00000702439.2",
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},
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"strand": false,
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "ENSG00000290005",
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"hgvs_c": "n.166+8264A>T",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000290005",
"gene_hgnc_id": null,
"hgvs_c": "n.278+8264A>T",
"hgvs_p": null,
"transcript": "ENST00000728994.1",
"protein_id": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000290005",
"gene_hgnc_id": null,
"hgvs_c": "n.166-2046A>T",
"hgvs_p": null,
"transcript": "ENST00000728995.1",
"protein_id": null,
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"mane_select": null,
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},
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}
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}