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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-33499216-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=33499216&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 33499216,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_025115.5",
      "consequences": [
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1484A>G",
          "hgvs_p": "p.Lys495Arg",
          "transcript": "NM_001102401.4",
          "protein_id": "NP_001095871.1",
          "transcript_support_level": null,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 508,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 1527,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000431156.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001102401.4"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1484A>G",
          "hgvs_p": "p.Lys495Arg",
          "transcript": "ENST00000431156.7",
          "protein_id": "ENSP00000411169.3",
          "transcript_support_level": 1,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 508,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 1527,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001102401.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000431156.7"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1484A>G",
          "hgvs_p": "p.Lys495Arg",
          "transcript": "ENST00000613904.1",
          "protein_id": "ENSP00000478396.1",
          "transcript_support_level": 1,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 508,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 1527,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000613904.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAK16",
          "gene_hgnc_id": 13703,
          "hgvs_c": "c.*587T>C",
          "hgvs_p": null,
          "transcript": "NM_032509.4",
          "protein_id": "NP_115898.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 300,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 903,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000360128.11",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_032509.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAK16",
          "gene_hgnc_id": 13703,
          "hgvs_c": "c.*587T>C",
          "hgvs_p": null,
          "transcript": "ENST00000360128.11",
          "protein_id": "ENSP00000353246.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 300,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 903,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_032509.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000360128.11"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1484A>G",
          "hgvs_p": "p.Lys495Arg",
          "transcript": "NM_001265581.2",
          "protein_id": "NP_001252510.1",
          "transcript_support_level": null,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 508,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 1527,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001265581.2"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1484A>G",
          "hgvs_p": "p.Lys495Arg",
          "transcript": "NM_025115.5",
          "protein_id": "NP_079391.2",
          "transcript_support_level": null,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 508,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 1527,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_025115.5"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1484A>G",
          "hgvs_p": "p.Lys495Arg",
          "transcript": "ENST00000360742.9",
          "protein_id": "ENSP00000353971.5",
          "transcript_support_level": 2,
          "aa_start": 495,
          "aa_end": null,
          "aa_length": 508,
          "cds_start": 1484,
          "cds_end": null,
          "cds_length": 1527,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000360742.9"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1478A>G",
          "hgvs_p": "p.Lys493Arg",
          "transcript": "ENST00000929793.1",
          "protein_id": "ENSP00000599852.1",
          "transcript_support_level": null,
          "aa_start": 493,
          "aa_end": null,
          "aa_length": 506,
          "cds_start": 1478,
          "cds_end": null,
          "cds_length": 1521,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000929793.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1478A>G",
          "hgvs_p": "p.Lys493Arg",
          "transcript": "ENST00000954159.1",
          "protein_id": "ENSP00000624218.1",
          "transcript_support_level": null,
          "aa_start": 493,
          "aa_end": null,
          "aa_length": 506,
          "cds_start": 1478,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000954159.1"
        },
        {
          "aa_ref": "K",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1391A>G",
          "hgvs_p": "p.Lys464Arg",
          "transcript": "NM_001330505.3",
          "protein_id": "NP_001317434.1",
          "transcript_support_level": null,
          "aa_start": 464,
          "aa_end": null,
          "aa_length": 477,
          "cds_start": 1391,
          "cds_end": null,
          "cds_length": 1434,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001330505.3"
        },
        {
          "aa_ref": "K",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
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          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1391A>G",
          "hgvs_p": "p.Lys464Arg",
          "transcript": "NM_001440381.1",
          "protein_id": "NP_001427310.1",
          "transcript_support_level": null,
          "aa_start": 464,
          "aa_end": null,
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          "cds_start": 1391,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001440381.1"
        },
        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "exon_count": 6,
          "intron_rank": null,
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          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1391A>G",
          "hgvs_p": "p.Lys464Arg",
          "transcript": "ENST00000520636.5",
          "protein_id": "ENSP00000428401.1",
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          "cds_start": 1391,
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        },
        {
          "aa_ref": "K",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1340A>G",
          "hgvs_p": "p.Lys447Arg",
          "transcript": "ENST00000897621.1",
          "protein_id": "ENSP00000567680.1",
          "transcript_support_level": null,
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          "cds_start": 1340,
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        {
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          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1340A>G",
          "hgvs_p": "p.Lys447Arg",
          "transcript": "ENST00000897622.1",
          "protein_id": "ENSP00000567681.1",
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          "cds_start": 1340,
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          "biotype": "protein_coding",
          "feature": "ENST00000897622.1"
        },
        {
          "aa_ref": "K",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1247A>G",
          "hgvs_p": "p.Lys416Arg",
          "transcript": "ENST00000897623.1",
          "protein_id": "ENSP00000567682.1",
          "transcript_support_level": null,
          "aa_start": 416,
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          "cds_start": 1247,
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        {
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          "exon_rank": 5,
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          "exon_count": 5,
          "intron_rank": null,
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          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "c.1247A>G",
          "hgvs_p": "p.Lys416Arg",
          "transcript": "ENST00000929794.1",
          "protein_id": "ENSP00000599853.1",
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        {
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          "gene_symbol": "TTI2",
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          "hgvs_c": "c.1247A>G",
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          "protein_id": "ENSP00000599854.1",
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        {
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          ],
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          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "MAK16",
          "gene_hgnc_id": 13703,
          "hgvs_c": "c.*587T>C",
          "hgvs_p": null,
          "transcript": "ENST00000929670.1",
          "protein_id": "ENSP00000599729.1",
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000929670.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MAK16",
          "gene_hgnc_id": 13703,
          "hgvs_c": "c.*587T>C",
          "hgvs_p": null,
          "transcript": "ENST00000929669.1",
          "protein_id": "ENSP00000599728.1",
          "transcript_support_level": null,
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          "aa_length": 299,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "exon_count": 10,
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          "gene_symbol": "MAK16",
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          "transcript": "ENST00000929668.1",
          "protein_id": "ENSP00000599727.1",
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          "aa_start": null,
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          "cds_start": null,
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          "cds_length": 897,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          "exon_rank": 9,
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          "exon_count": 9,
          "intron_rank": null,
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          "gene_symbol": "MAK16",
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          "hgvs_c": "c.*587T>C",
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          "transcript": "ENST00000954019.1",
          "protein_id": "ENSP00000624078.1",
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          "aa_start": null,
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          "cds_start": null,
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          "cds_length": 837,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000954019.1"
        },
        {
          "aa_ref": null,
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
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          "gene_symbol": "MAK16",
          "gene_hgnc_id": 13703,
          "hgvs_c": "c.*587T>C",
          "hgvs_p": null,
          "transcript": "ENST00000929667.1",
          "protein_id": "ENSP00000599726.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 156,
          "cds_start": null,
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          "cds_length": 471,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000929667.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "TTI2",
          "gene_hgnc_id": 26262,
          "hgvs_c": "n.628+1112A>G",
          "hgvs_p": null,
          "transcript": "ENST00000519356.1",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
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          "aa_length": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000519356.1"
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      ],
      "gene_symbol": "TTI2",
      "gene_hgnc_id": 26262,
      "dbsnp": "rs143113617",
      "frequency_reference_population": 0.000058235055,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 94,
      "gnomad_exomes_af": 0.0000259949,
      "gnomad_genomes_af": 0.000367637,
      "gnomad_exomes_ac": 38,
      "gnomad_genomes_ac": 56,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.015920490026474,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.008,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.0756,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.55,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -0.032,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -5,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Strong,BS1_Supporting",
      "acmg_by_gene": [
        {
          "score": -5,
          "benign_score": 5,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BS1_Supporting"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_025115.5",
          "gene_symbol": "TTI2",
          "hgnc_id": 26262,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1484A>G",
          "hgvs_p": "p.Lys495Arg"
        },
        {
          "score": -4,
          "benign_score": 4,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_032509.4",
          "gene_symbol": "MAK16",
          "hgnc_id": 13703,
          "effects": [
            "3_prime_UTR_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.*587T>C",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Inborn genetic diseases",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "Inborn genetic diseases",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}