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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-35461963-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=35461963&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "8",
"pos": 35461963,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000404895.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_080872.4",
"protein_id": "NP_543148.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 953,
"cds_start": -4,
"cds_end": null,
"cds_length": 2862,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9149,
"mane_select": "ENST00000404895.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "ENST00000404895.7",
"protein_id": "ENSP00000385143.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 953,
"cds_start": -4,
"cds_end": null,
"cds_length": 2862,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9149,
"mane_select": "NM_080872.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001438417.1",
"protein_id": "NP_001425346.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 977,
"cds_start": -4,
"cds_end": null,
"cds_length": 2934,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9221,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001438418.1",
"protein_id": "NP_001425347.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 967,
"cds_start": -4,
"cds_end": null,
"cds_length": 2904,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9191,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001438420.1",
"protein_id": "NP_001425349.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 966,
"cds_start": -4,
"cds_end": null,
"cds_length": 2901,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9188,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "ENST00000416672.5",
"protein_id": "ENSP00000412652.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 958,
"cds_start": -4,
"cds_end": null,
"cds_length": 2877,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3532,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001438421.1",
"protein_id": "NP_001425350.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 942,
"cds_start": -4,
"cds_end": null,
"cds_length": 2829,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9116,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001438422.1",
"protein_id": "NP_001425351.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 940,
"cds_start": -4,
"cds_end": null,
"cds_length": 2823,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9110,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001438423.1",
"protein_id": "NP_001425352.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 929,
"cds_start": -4,
"cds_end": null,
"cds_length": 2790,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9077,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001438424.1",
"protein_id": "NP_001425353.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 921,
"cds_start": -4,
"cds_end": null,
"cds_length": 2766,
"cdna_start": null,
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"cdna_length": 9053,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001438425.1",
"protein_id": "NP_001425354.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 911,
"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 1,
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"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
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"transcript": "NM_001438426.1",
"protein_id": "NP_001425355.1",
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 1,
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"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "NM_001410918.1",
"protein_id": "NP_001397847.1",
"transcript_support_level": null,
"aa_start": null,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "ENST00000420357.5",
"protein_id": "ENSP00000392739.1",
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},
{
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"strand": true,
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"intron_variant"
],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "UNC5D",
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"hgvs_c": "c.104-87329G>A",
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"transcript": "NM_001437801.1",
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},
{
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"protein_coding": true,
"strand": true,
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 1,
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"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
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"transcript": "ENST00000287272.6",
"protein_id": "ENSP00000287272.2",
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},
{
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],
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"gene_symbol": "UNC5D",
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"hgvs_c": "c.104-87329G>A",
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"transcript": "NM_001438427.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 1,
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"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null,
"transcript": "XM_047421378.1",
"protein_id": "XP_047277334.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "UNC5D",
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"transcript": "XM_047421379.1",
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},
{
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],
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"hgvs_c": "c.104-87329G>A",
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"transcript": "XM_047421382.1",
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"feature": null
}
],
"gene_symbol": "UNC5D",
"gene_hgnc_id": 18634,
"dbsnp": "rs4577954",
"frequency_reference_population": 0.8427073,
"hom_count_reference_population": 54551,
"allele_count_reference_population": 128196,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.842707,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 128196,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 54551,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9100000262260437,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.91,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.056,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000404895.7",
"gene_symbol": "UNC5D",
"hgnc_id": 18634,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.104-87329G>A",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}