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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-42318599-T-TG (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=42318599&ref=T&alt=TG&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 42318599,
      "ref": "T",
      "alt": "TG",
      "effect": "frameshift_variant",
      "transcript": "NM_001556.3",
      "consequences": [
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "NM_001556.3",
          "protein_id": "NP_001547.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 756,
          "cds_start": 1293,
          "cds_end": null,
          "cds_length": 2271,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000520810.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001556.3"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "ENST00000520810.6",
          "protein_id": "ENSP00000430684.1",
          "transcript_support_level": 1,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 756,
          "cds_start": 1293,
          "cds_end": null,
          "cds_length": 2271,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001556.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000520810.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "n.*111dupG",
          "hgvs_p": null,
          "transcript": "ENST00000523517.5",
          "protein_id": "ENSP00000430114.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000523517.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "n.*111dupG",
          "hgvs_p": null,
          "transcript": "ENST00000523517.5",
          "protein_id": "ENSP00000430114.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000523517.5"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "ENST00000957021.1",
          "protein_id": "ENSP00000627080.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 772,
          "cds_start": 1293,
          "cds_end": null,
          "cds_length": 2319,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957021.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "ENST00000870192.1",
          "protein_id": "ENSP00000540251.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 769,
          "cds_start": 1293,
          "cds_end": null,
          "cds_length": 2310,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000870192.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "ENST00000870190.1",
          "protein_id": "ENSP00000540249.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 760,
          "cds_start": 1293,
          "cds_end": null,
          "cds_length": 2283,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000870190.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "ENST00000870193.1",
          "protein_id": "ENSP00000540252.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 756,
          "cds_start": 1293,
          "cds_end": null,
          "cds_length": 2271,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000870193.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "ENST00000870194.1",
          "protein_id": "ENSP00000540253.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 756,
          "cds_start": 1293,
          "cds_end": null,
          "cds_length": 2271,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000870194.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "ENST00000957019.1",
          "protein_id": "ENSP00000627078.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 754,
          "cds_start": 1293,
          "cds_end": null,
          "cds_length": 2265,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957019.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1286dupG",
          "hgvs_p": "p.Gln430fs",
          "transcript": "ENST00000957020.1",
          "protein_id": "ENSP00000627079.1",
          "transcript_support_level": null,
          "aa_start": 429,
          "aa_end": null,
          "aa_length": 754,
          "cds_start": 1287,
          "cds_end": null,
          "cds_length": 2265,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957020.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1202dupG",
          "hgvs_p": "p.Gln402fs",
          "transcript": "ENST00000935692.1",
          "protein_id": "ENSP00000605751.1",
          "transcript_support_level": null,
          "aa_start": 401,
          "aa_end": null,
          "aa_length": 726,
          "cds_start": 1203,
          "cds_end": null,
          "cds_length": 2181,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000935692.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1142dupG",
          "hgvs_p": "p.Gln382fs",
          "transcript": "ENST00000870191.1",
          "protein_id": "ENSP00000540250.1",
          "transcript_support_level": null,
          "aa_start": 381,
          "aa_end": null,
          "aa_length": 706,
          "cds_start": 1143,
          "cds_end": null,
          "cds_length": 2121,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000870191.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1115dupG",
          "hgvs_p": "p.Gln373fs",
          "transcript": "NM_001242778.2",
          "protein_id": "NP_001229707.1",
          "transcript_support_level": null,
          "aa_start": 372,
          "aa_end": null,
          "aa_length": 697,
          "cds_start": 1116,
          "cds_end": null,
          "cds_length": 2094,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001242778.2"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1100dupG",
          "hgvs_p": "p.Gln368fs",
          "transcript": "NM_001190720.3",
          "protein_id": "NP_001177649.2",
          "transcript_support_level": null,
          "aa_start": 367,
          "aa_end": null,
          "aa_length": 692,
          "cds_start": 1101,
          "cds_end": null,
          "cds_length": 2079,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001190720.3"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1100dupG",
          "hgvs_p": "p.Gln368fs",
          "transcript": "ENST00000520835.7",
          "protein_id": "ENSP00000430868.2",
          "transcript_support_level": 2,
          "aa_start": 367,
          "aa_end": null,
          "aa_length": 692,
          "cds_start": 1101,
          "cds_end": null,
          "cds_length": 2079,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000520835.7"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "XM_011544517.3",
          "protein_id": "XP_011542819.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 805,
          "cds_start": 1293,
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          "cds_length": 2418,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "XM_011544517.3"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs",
          "transcript": "XM_047421757.1",
          "protein_id": "XP_047277713.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 756,
          "cds_start": 1293,
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          "cdna_start": null,
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          "cdna_length": null,
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          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047421757.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1142dupG",
          "hgvs_p": "p.Gln382fs",
          "transcript": "XM_047421758.1",
          "protein_id": "XP_047277714.1",
          "transcript_support_level": null,
          "aa_start": 381,
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          "cds_start": 1143,
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          "cds_length": 2268,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047421758.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "G?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IKBKB",
          "gene_hgnc_id": 5960,
          "hgvs_c": "c.1115dupG",
          "hgvs_p": "p.Gln373fs",
          "transcript": "XM_047421759.1",
          "protein_id": "XP_047277715.1",
          "transcript_support_level": null,
          "aa_start": 372,
          "aa_end": null,
          "aa_length": 746,
          "cds_start": 1116,
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          "cds_length": 2241,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
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        {
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      ],
      "gene_symbol": "IKBKB",
      "gene_hgnc_id": 5960,
      "dbsnp": "rs886041036",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": 0.05999999865889549,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 7.972,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.06,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 11,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5",
      "acmg_by_gene": [
        {
          "score": 11,
          "benign_score": 0,
          "pathogenic_score": 11,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5"
          ],
          "verdict": "Pathogenic",
          "transcript": "NM_001556.3",
          "gene_symbol": "IKBKB",
          "hgnc_id": 5960,
          "effects": [
            "frameshift_variant"
          ],
          "inheritance_mode": "AR,AD",
          "hgvs_c": "c.1292dupG",
          "hgvs_p": "p.Gln432fs"
        }
      ],
      "clinvar_disease": "IKBKB-related disorder,Severe combined immunodeficiency due to IKK2 deficiency",
      "clinvar_classification": "Pathogenic",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "Severe combined immunodeficiency due to IKK2 deficiency|IKBKB-related disorder",
      "pathogenicity_classification_combined": "Pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}