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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-42428829-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=42428829&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "8",
"pos": 42428829,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_006749.5",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "NM_001257180.2",
"protein_id": "NP_001244109.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000520262.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001257180.2"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000520262.6",
"protein_id": "ENSP00000429754.1",
"transcript_support_level": 2,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001257180.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000520262.6"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000342228.7",
"protein_id": "ENSP00000340465.3",
"transcript_support_level": 1,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000342228.7"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000520179.5",
"protein_id": "ENSP00000429712.1",
"transcript_support_level": 1,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000520179.5"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1888G>A",
"hgvs_p": "p.Glu630Lys",
"transcript": "ENST00000965915.1",
"protein_id": "ENSP00000635974.1",
"transcript_support_level": null,
"aa_start": 630,
"aa_end": null,
"aa_length": 707,
"cds_start": 1888,
"cds_end": null,
"cds_length": 2124,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965915.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1744G>A",
"hgvs_p": "p.Glu582Lys",
"transcript": "ENST00000965920.1",
"protein_id": "ENSP00000635979.1",
"transcript_support_level": null,
"aa_start": 582,
"aa_end": null,
"aa_length": 659,
"cds_start": 1744,
"cds_end": null,
"cds_length": 1980,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965920.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1744G>A",
"hgvs_p": "p.Glu582Lys",
"transcript": "ENST00000965925.1",
"protein_id": "ENSP00000635984.1",
"transcript_support_level": null,
"aa_start": 582,
"aa_end": null,
"aa_length": 659,
"cds_start": 1744,
"cds_end": null,
"cds_length": 1980,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965925.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "NM_001257181.2",
"protein_id": "NP_001244110.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001257181.2"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "NM_006749.5",
"protein_id": "NP_006740.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_006749.5"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000517366.2",
"protein_id": "ENSP00000427756.2",
"transcript_support_level": 4,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000517366.2"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000518384.2",
"protein_id": "ENSP00000430462.2",
"transcript_support_level": 4,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000518384.2"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000518717.2",
"protein_id": "ENSP00000430166.2",
"transcript_support_level": 4,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000518717.2"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000713988.1",
"protein_id": "ENSP00000519279.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000713988.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908098.1",
"protein_id": "ENSP00000578157.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908098.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908099.1",
"protein_id": "ENSP00000578158.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908099.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908100.1",
"protein_id": "ENSP00000578159.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908100.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908101.1",
"protein_id": "ENSP00000578160.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908101.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908107.1",
"protein_id": "ENSP00000578166.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908107.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908108.1",
"protein_id": "ENSP00000578167.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908108.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908109.1",
"protein_id": "ENSP00000578168.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908109.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908110.1",
"protein_id": "ENSP00000578169.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
"cds_length": 1959,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000908110.1"
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys",
"transcript": "ENST00000908111.1",
"protein_id": "ENSP00000578170.1",
"transcript_support_level": null,
"aa_start": 575,
"aa_end": null,
"aa_length": 652,
"cds_start": 1723,
"cds_end": null,
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{
"aa_ref": "E",
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},
{
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"gene_symbol": "SLC20A2",
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"hgvs_c": "c.1312G>A",
"hgvs_p": "p.Glu438Lys",
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"protein_id": "XP_016869241.1",
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"feature": "XM_017013752.3"
},
{
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"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
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"gene_symbol": "SLC20A2",
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"hgvs_c": "n.797G>A",
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"transcript": "ENST00000713989.1",
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"biotype": "pseudogene",
"feature": "ENST00000713989.1"
}
],
"gene_symbol": "SLC20A2",
"gene_hgnc_id": 10947,
"dbsnp": "rs387906653",
"frequency_reference_population": 0.0000013803366,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000138034,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9515701532363892,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.857,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.9996,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.45,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 7.905,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 20,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PS3,PM1,PM2,PP3_Strong,PP5_Very_Strong",
"acmg_by_gene": [
{
"score": 20,
"benign_score": 0,
"pathogenic_score": 20,
"criteria": [
"PS3",
"PM1",
"PM2",
"PP3_Strong",
"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "NM_006749.5",
"gene_symbol": "SLC20A2",
"hgnc_id": 10947,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.1723G>A",
"hgvs_p": "p.Glu575Lys"
}
],
"clinvar_disease": "Idiopathic basal ganglia calcification 1",
"clinvar_classification": "Pathogenic/Likely pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:1 LP:2",
"phenotype_combined": "Idiopathic basal ganglia calcification 1",
"pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}