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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-93924304-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=93924304&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "8",
"pos": 93924304,
"ref": "G",
"alt": "C",
"effect": "3_prime_UTR_variant",
"transcript": "NM_001161779.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "NM_018444.4",
"protein_id": "NP_060914.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": null,
"cds_end": null,
"cds_length": 1614,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4210,
"mane_select": "ENST00000297598.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_018444.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000297598.5",
"protein_id": "ENSP00000297598.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": null,
"cds_end": null,
"cds_length": 1614,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4210,
"mane_select": "NM_018444.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000297598.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000520728.5",
"protein_id": "ENSP00000428317.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": null,
"cds_end": null,
"cds_length": 1614,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2554,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000520728.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "NM_001161779.2",
"protein_id": "NP_001155251.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 562,
"cds_start": null,
"cds_end": null,
"cds_length": 1689,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4384,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001161779.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "NM_001161780.2",
"protein_id": "NP_001155252.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 562,
"cds_start": null,
"cds_end": null,
"cds_length": 1689,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4245,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001161780.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000396200.3",
"protein_id": "ENSP00000379503.3",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 562,
"cds_start": null,
"cds_end": null,
"cds_length": 1689,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4358,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000396200.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "NM_001161781.2",
"protein_id": "NP_001155253.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": null,
"cds_end": null,
"cds_length": 1614,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4349,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001161781.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000885462.1",
"protein_id": "ENSP00000555521.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": null,
"cds_end": null,
"cds_length": 1614,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4457,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000885462.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000885463.1",
"protein_id": "ENSP00000555522.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": null,
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"cds_length": 1614,
"cdna_start": null,
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"cdna_length": 4332,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000885463.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000885464.1",
"protein_id": "ENSP00000555523.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 4254,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000885464.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
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"exon_count": 3,
"intron_rank": null,
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"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000885465.1",
"protein_id": "ENSP00000555524.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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},
{
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"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
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"intron_rank": null,
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"gene_symbol": "PDP1",
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"hgvs_c": "c.*631G>C",
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"transcript": "ENST00000885466.1",
"protein_id": "ENSP00000555525.1",
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},
{
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"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
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"exon_count": 2,
"intron_rank": null,
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"gene_symbol": "PDP1",
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"transcript": "ENST00000885467.1",
"protein_id": "ENSP00000555526.1",
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},
{
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"strand": true,
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],
"exon_rank": 3,
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"gene_symbol": "PDP1",
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"hgvs_c": "c.*631G>C",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
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"exon_count": 4,
"intron_rank": null,
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"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000885469.1",
"protein_id": "ENSP00000555528.1",
"transcript_support_level": null,
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"cds_start": null,
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"biotype": "protein_coding",
"feature": "ENST00000885469.1"
},
{
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"protein_coding": true,
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"3_prime_UTR_variant"
],
"exon_rank": 4,
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"gene_symbol": "PDP1",
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"hgvs_c": "c.*631G>C",
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"feature": "ENST00000940302.1"
},
{
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"strand": true,
"consequences": [
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],
"exon_rank": 3,
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"exon_count": 3,
"intron_rank": null,
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"gene_symbol": "PDP1",
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"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000942001.1",
"protein_id": "ENSP00000612060.1",
"transcript_support_level": null,
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"biotype": "protein_coding",
"feature": "ENST00000942001.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000942002.1",
"protein_id": "ENSP00000612061.1",
"transcript_support_level": null,
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},
{
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"strand": true,
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],
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"intron_rank": null,
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"gene_symbol": "PDP1",
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"hgvs_c": "c.*631G>C",
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},
{
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"3_prime_UTR_variant"
],
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"intron_rank": null,
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"gene_symbol": "PDP1",
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"hgvs_c": "c.*631G>C",
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"transcript": "ENST00000942004.1",
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"feature": "ENST00000942004.1"
},
{
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"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
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"intron_rank": null,
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"gene_symbol": "PDP1",
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"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000942005.1",
"protein_id": "ENSP00000612064.1",
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"cds_start": null,
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"cdna_start": null,
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"cdna_length": 4434,
"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000942005.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PDP1",
"gene_hgnc_id": 9279,
"hgvs_c": "c.*631G>C",
"hgvs_p": null,
"transcript": "ENST00000942006.1",
"protein_id": "ENSP00000612065.1",
"transcript_support_level": null,
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"aa_end": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000942006.1"
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
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}