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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 8-94939869-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=94939869&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "8",
      "pos": 94939869,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_033285.4",
      "consequences": [
        {
          "aa_ref": "S",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TP53INP1",
          "gene_hgnc_id": 18022,
          "hgvs_c": "c.464G>A",
          "hgvs_p": "p.Ser155Asn",
          "transcript": "NM_033285.4",
          "protein_id": "NP_150601.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 240,
          "cds_start": 464,
          "cds_end": null,
          "cds_length": 723,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000342697.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_033285.4"
        },
        {
          "aa_ref": "S",
          "aa_alt": "N",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TP53INP1",
          "gene_hgnc_id": 18022,
          "hgvs_c": "c.464G>A",
          "hgvs_p": "p.Ser155Asn",
          "transcript": "ENST00000342697.5",
          "protein_id": "ENSP00000344215.4",
          "transcript_support_level": 1,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 240,
          "cds_start": 464,
          "cds_end": null,
          "cds_length": 723,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_033285.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000342697.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TP53INP1",
          "gene_hgnc_id": 18022,
          "hgvs_c": "c.464G>A",
          "hgvs_p": "p.Ser155Asn",
          "transcript": "ENST00000448464.6",
          "protein_id": "ENSP00000390063.2",
          "transcript_support_level": 1,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 164,
          "cds_start": 464,
          "cds_end": null,
          "cds_length": 495,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000448464.6"
        },
        {
          "aa_ref": "S",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TP53INP1",
          "gene_hgnc_id": 18022,
          "hgvs_c": "c.464G>A",
          "hgvs_p": "p.Ser155Asn",
          "transcript": "ENST00000942548.1",
          "protein_id": "ENSP00000612607.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 240,
          "cds_start": 464,
          "cds_end": null,
          "cds_length": 723,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000942548.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TP53INP1",
          "gene_hgnc_id": 18022,
          "hgvs_c": "c.464G>A",
          "hgvs_p": "p.Ser155Asn",
          "transcript": "NM_001135733.2",
          "protein_id": "NP_001129205.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 164,
          "cds_start": 464,
          "cds_end": null,
          "cds_length": 495,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001135733.2"
        },
        {
          "aa_ref": "S",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TP53INP1",
          "gene_hgnc_id": 18022,
          "hgvs_c": "c.464G>A",
          "hgvs_p": "p.Ser155Asn",
          "transcript": "XM_011517386.3",
          "protein_id": "XP_011515688.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 240,
          "cds_start": 464,
          "cds_end": null,
          "cds_length": 723,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011517386.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-263-18126C>T",
          "hgvs_p": null,
          "transcript": "NM_001354516.2",
          "protein_id": "NP_001341445.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 281,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 846,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001354516.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-485-18126C>T",
          "hgvs_p": null,
          "transcript": "NM_001354514.2",
          "protein_id": "NP_001341443.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 241,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 726,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001354514.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-268-18126C>T",
          "hgvs_p": null,
          "transcript": "NM_001354515.2",
          "protein_id": "NP_001341444.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 241,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 726,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001354515.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-935-5614C>T",
          "hgvs_p": null,
          "transcript": "ENST00000396113.5",
          "protein_id": "ENSP00000379419.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 241,
          "cds_start": null,
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          "cds_length": 726,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000396113.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-687-18126C>T",
          "hgvs_p": null,
          "transcript": "NM_001354522.2",
          "protein_id": "NP_001341451.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 181,
          "cds_start": null,
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          "cds_length": 546,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001354522.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 1,
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          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-760-18126C>T",
          "hgvs_p": null,
          "transcript": "NM_001354524.2",
          "protein_id": "NP_001341453.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 181,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001354524.2"
        },
        {
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          "consequences": [
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          ],
          "exon_rank": null,
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          "intron_rank": 1,
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          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-804-18126C>T",
          "hgvs_p": null,
          "transcript": "NM_001354525.2",
          "protein_id": "NP_001341454.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001354525.2"
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 9,
          "intron_rank": 1,
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          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-321-18126C>T",
          "hgvs_p": null,
          "transcript": "NM_001354534.2",
          "protein_id": "NP_001341463.1",
          "transcript_support_level": null,
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          "cds_start": null,
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        {
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          "gene_symbol": "NDUFAF6",
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          "hgvs_c": "c.-387-18126C>T",
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          "transcript": "ENST00000523378.5",
          "protein_id": "ENSP00000428034.1",
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          "cds_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000523378.5"
        },
        {
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          "canonical": false,
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          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 8,
          "intron_rank": 1,
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          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "c.-440-18126C>T",
          "hgvs_p": null,
          "transcript": "ENST00000519136.5",
          "protein_id": "ENSP00000429585.1",
          "transcript_support_level": 5,
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          "cds_start": null,
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          "cdna_start": null,
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        {
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          "strand": true,
          "consequences": [
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          ],
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          "exon_count": 5,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "n.396-18126C>T",
          "hgvs_p": null,
          "transcript": "ENST00000521840.2",
          "protein_id": null,
          "transcript_support_level": 2,
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          "biotype": "pseudogene",
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        {
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          "strand": true,
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          ],
          "exon_rank": null,
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          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "n.347-18126C>T",
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        {
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          ],
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          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "n.-387-18126C>T",
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          "transcript": "ENST00000697355.1",
          "protein_id": "ENSP00000513277.1",
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000697355.1"
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "n.107-5614C>T",
          "hgvs_p": null,
          "transcript": "ENST00000697356.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": null,
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          "cds_length": null,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "pseudogene",
          "feature": "ENST00000697356.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "n.130-18126C>T",
          "hgvs_p": null,
          "transcript": "NR_148903.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "NR_148903.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "n.130-10902C>T",
          "hgvs_p": null,
          "transcript": "NR_148904.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "NR_148904.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "n.130-5614C>T",
          "hgvs_p": null,
          "transcript": "NR_148905.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "NR_148905.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NDUFAF6",
          "gene_hgnc_id": 28625,
          "hgvs_c": "n.130-5614C>T",
          "hgvs_p": null,
          "transcript": "NR_148906.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "NR_148906.2"
        }
      ],
      "gene_symbol": "TP53INP1",
      "gene_hgnc_id": 18022,
      "dbsnp": "rs1376405304",
      "frequency_reference_population": 0.00000656918,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 1,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": 0.00000656918,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": 1,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.07154780626296997,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.046,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.0786,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.65,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 1.176,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_033285.4",
          "gene_symbol": "TP53INP1",
          "hgnc_id": 18022,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.464G>A",
          "hgvs_p": "p.Ser155Asn"
        },
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001354516.2",
          "gene_symbol": "NDUFAF6",
          "hgnc_id": 28625,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "AR,AD",
          "hgvs_c": "c.-263-18126C>T",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}