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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 9-122849799-G-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=122849799&ref=G&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "9",
      "pos": 122849799,
      "ref": "G",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_001100588.3",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3404C>A",
          "hgvs_p": "p.Pro1135Gln",
          "transcript": "NM_001100588.3",
          "protein_id": "NP_001094058.1",
          "transcript_support_level": null,
          "aa_start": 1135,
          "aa_end": null,
          "aa_length": 1191,
          "cds_start": 3404,
          "cds_end": null,
          "cds_length": 3576,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000357244.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001100588.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3404C>A",
          "hgvs_p": "p.Pro1135Gln",
          "transcript": "ENST00000357244.7",
          "protein_id": "ENSP00000349783.2",
          "transcript_support_level": 5,
          "aa_start": 1135,
          "aa_end": null,
          "aa_length": 1191,
          "cds_start": 3404,
          "cds_end": null,
          "cds_length": 3576,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001100588.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000357244.7"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3404C>A",
          "hgvs_p": "p.Pro1135Gln",
          "transcript": "ENST00000373670.5",
          "protein_id": "ENSP00000362774.1",
          "transcript_support_level": 5,
          "aa_start": 1135,
          "aa_end": null,
          "aa_length": 1191,
          "cds_start": 3404,
          "cds_end": null,
          "cds_length": 3576,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000373670.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3404C>A",
          "hgvs_p": "p.Pro1135Gln",
          "transcript": "ENST00000954280.1",
          "protein_id": "ENSP00000624339.1",
          "transcript_support_level": null,
          "aa_start": 1135,
          "aa_end": null,
          "aa_length": 1191,
          "cds_start": 3404,
          "cds_end": null,
          "cds_length": 3576,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954280.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3404C>A",
          "hgvs_p": "p.Pro1135Gln",
          "transcript": "ENST00000954288.1",
          "protein_id": "ENSP00000624347.1",
          "transcript_support_level": null,
          "aa_start": 1135,
          "aa_end": null,
          "aa_length": 1191,
          "cds_start": 3404,
          "cds_end": null,
          "cds_length": 3576,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954288.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3404C>A",
          "hgvs_p": "p.Pro1135Gln",
          "transcript": "ENST00000954289.1",
          "protein_id": "ENSP00000624348.1",
          "transcript_support_level": null,
          "aa_start": 1135,
          "aa_end": null,
          "aa_length": 1191,
          "cds_start": 3404,
          "cds_end": null,
          "cds_length": 3576,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954289.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3398C>A",
          "hgvs_p": "p.Pro1133Gln",
          "transcript": "ENST00000915905.1",
          "protein_id": "ENSP00000585964.1",
          "transcript_support_level": null,
          "aa_start": 1133,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3398,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000915905.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3398C>A",
          "hgvs_p": "p.Pro1133Gln",
          "transcript": "ENST00000954276.1",
          "protein_id": "ENSP00000624335.1",
          "transcript_support_level": null,
          "aa_start": 1133,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3398,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954276.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3398C>A",
          "hgvs_p": "p.Pro1133Gln",
          "transcript": "ENST00000954278.1",
          "protein_id": "ENSP00000624337.1",
          "transcript_support_level": null,
          "aa_start": 1133,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3398,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954278.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3398C>A",
          "hgvs_p": "p.Pro1133Gln",
          "transcript": "ENST00000954284.1",
          "protein_id": "ENSP00000624343.1",
          "transcript_support_level": null,
          "aa_start": 1133,
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          "aa_length": 1189,
          "cds_start": 3398,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000954284.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3398C>A",
          "hgvs_p": "p.Pro1133Gln",
          "transcript": "ENST00000954287.1",
          "protein_id": "ENSP00000624346.1",
          "transcript_support_level": null,
          "aa_start": 1133,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3398,
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          "cds_length": 3570,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954287.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 20,
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          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3290C>A",
          "hgvs_p": "p.Pro1097Gln",
          "transcript": "NM_001354482.2",
          "protein_id": "NP_001341411.1",
          "transcript_support_level": null,
          "aa_start": 1097,
          "aa_end": null,
          "aa_length": 1153,
          "cds_start": 3290,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001354482.2"
        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3290C>A",
          "hgvs_p": "p.Pro1097Gln",
          "transcript": "ENST00000885804.1",
          "protein_id": "ENSP00000555863.1",
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          "aa_start": 1097,
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          "cds_start": 3290,
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          "cds_length": 3462,
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          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885804.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3233C>A",
          "hgvs_p": "p.Pro1078Gln",
          "transcript": "NM_001354479.2",
          "protein_id": "NP_001341408.1",
          "transcript_support_level": null,
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          "biotype": "protein_coding",
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        {
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          "intron_rank": null,
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          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3233C>A",
          "hgvs_p": "p.Pro1078Gln",
          "transcript": "ENST00000915904.1",
          "protein_id": "ENSP00000585963.1",
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          "biotype": "protein_coding",
          "feature": "ENST00000915904.1"
        },
        {
          "aa_ref": "P",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 20,
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          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3170C>A",
          "hgvs_p": "p.Pro1057Gln",
          "transcript": "ENST00000954282.1",
          "protein_id": "ENSP00000624341.1",
          "transcript_support_level": null,
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          "feature": "ENST00000954282.1"
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        {
          "aa_ref": "P",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
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          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3164C>A",
          "hgvs_p": "p.Pro1055Gln",
          "transcript": "ENST00000915902.1",
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        {
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          ],
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          "exon_count": 19,
          "intron_rank": null,
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          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3119C>A",
          "hgvs_p": "p.Pro1040Gln",
          "transcript": "ENST00000954286.1",
          "protein_id": "ENSP00000624345.1",
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        },
        {
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          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3095C>A",
          "hgvs_p": "p.Pro1032Gln",
          "transcript": "ENST00000915903.1",
          "protein_id": "ENSP00000585962.1",
          "transcript_support_level": null,
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          "cds_start": 3095,
          "cds_end": null,
          "cds_length": 3267,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000915903.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RC3H2",
          "gene_hgnc_id": 21461,
          "hgvs_c": "c.3385C>A",
          "hgvs_p": "p.Arg1129Arg",
          "transcript": "NM_001354478.2",
          "protein_id": "NP_001341407.1",
          "transcript_support_level": null,
          "aa_start": 1129,
          "aa_end": null,
          "aa_length": 1129,
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          "cds_start": 559,
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        {
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          "biotype": "nonsense_mediated_decay",
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        {
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          "hgvs_c": "n.*1885C>A",
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          "transcript": "ENST00000498479.5",
          "protein_id": "ENSP00000474709.1",
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          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000498479.5"
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      ],
      "gene_symbol": "RC3H2",
      "gene_hgnc_id": 21461,
      "dbsnp": "rs764724224",
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      "hom_count_reference_population": 0,
      "allele_count_reference_population": 3,
      "gnomad_exomes_af": 0.00000212029,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 3,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.5689369440078735,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.36000001430511475,
      "splice_prediction_selected": "Uncertain_significance",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.287,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1303,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.22,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 6.412,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0.36,
      "spliceai_max_prediction": "Uncertain_significance",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_by_gene": [
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001100588.3",
          "gene_symbol": "RC3H2",
          "hgnc_id": 21461,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.3404C>A",
          "hgvs_p": "p.Pro1135Gln"
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.