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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-125306109-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=125306109&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 125306109,
"ref": "G",
"alt": "T",
"effect": "intron_variant",
"transcript": "NM_015635.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_001282680.3",
"protein_id": "NP_001269609.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1460,
"cds_start": null,
"cds_end": null,
"cds_length": 4383,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000297933.11",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001282680.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000297933.11",
"protein_id": "ENSP00000297933.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1460,
"cds_start": null,
"cds_end": null,
"cds_length": 4383,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001282680.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000297933.11"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000495955.5",
"protein_id": "ENSP00000419063.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1478,
"cds_start": null,
"cds_end": null,
"cds_length": 4437,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000495955.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000312123.13",
"protein_id": "ENSP00000309582.9",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1439,
"cds_start": null,
"cds_end": null,
"cds_length": 4320,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000312123.13"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000394084.5",
"protein_id": "ENSP00000377646.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 497,
"cds_start": null,
"cds_end": null,
"cds_length": 1494,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000394084.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_015635.4",
"protein_id": "NP_056450.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1487,
"cds_start": null,
"cds_end": null,
"cds_length": 4464,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015635.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000394105.6",
"protein_id": "ENSP00000377665.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1487,
"cds_start": null,
"cds_end": null,
"cds_length": 4464,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000394105.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000888083.1",
"protein_id": "ENSP00000558142.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1487,
"cds_start": null,
"cds_end": null,
"cds_length": 4464,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000888083.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_001282679.2",
"protein_id": "NP_001269608.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1478,
"cds_start": null,
"cds_end": null,
"cds_length": 4437,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001282679.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000394104.6",
"protein_id": "ENSP00000377664.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1478,
"cds_start": null,
"cds_end": null,
"cds_length": 4437,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000394104.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000937672.1",
"protein_id": "ENSP00000607731.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1478,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000937672.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_001438415.1",
"protein_id": "NP_001425344.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1466,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438415.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000937674.1",
"protein_id": "ENSP00000607733.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1466,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000937674.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 4,
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"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
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"transcript": "NM_001354294.2",
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"biotype": "protein_coding",
"feature": "NM_001354294.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_001354295.2",
"protein_id": "NP_001341224.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001354295.2"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_001354296.2",
"protein_id": "NP_001341225.1",
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"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001354296.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_001354298.2",
"protein_id": "NP_001341227.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001354298.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_001354299.2",
"protein_id": "NP_001341228.1",
"transcript_support_level": null,
"aa_start": null,
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"biotype": "protein_coding",
"feature": "NM_001354299.2"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 28,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "NM_001354301.2",
"protein_id": "NP_001341230.1",
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"biotype": "protein_coding",
"feature": "NM_001354301.2"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000888082.1",
"protein_id": "ENSP00000558141.1",
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"feature": "ENST00000888082.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000937667.1",
"protein_id": "ENSP00000607726.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000937667.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "GAPVD1",
"gene_hgnc_id": 23375,
"hgvs_c": "c.1116+960G>T",
"hgvs_p": null,
"transcript": "ENST00000937668.1",
"protein_id": "ENSP00000607727.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000937668.1"
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
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