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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 9-127936603-T-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=127936603&ref=T&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "9",
      "pos": 127936603,
      "ref": "T",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_003863.4",
      "consequences": [
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.146A>T",
          "hgvs_p": "p.Tyr49Phe",
          "transcript": "NM_003863.4",
          "protein_id": "NP_003854.1",
          "transcript_support_level": null,
          "aa_start": 49,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": 146,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000314392.13",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_003863.4"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.146A>T",
          "hgvs_p": "p.Tyr49Phe",
          "transcript": "ENST00000314392.13",
          "protein_id": "ENSP00000322181.8",
          "transcript_support_level": 1,
          "aa_start": 49,
          "aa_end": null,
          "aa_length": 84,
          "cds_start": 146,
          "cds_end": null,
          "cds_length": 255,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_003863.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000314392.13"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "n.438A>T",
          "hgvs_p": null,
          "transcript": "ENST00000470181.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000470181.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "n.930A>T",
          "hgvs_p": null,
          "transcript": "ENST00000495270.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000495270.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.146A>T",
          "hgvs_p": "p.Tyr49Phe",
          "transcript": "ENST00000373110.4",
          "protein_id": "ENSP00000362202.4",
          "transcript_support_level": 2,
          "aa_start": 49,
          "aa_end": null,
          "aa_length": 130,
          "cds_start": 146,
          "cds_end": null,
          "cds_length": 393,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000373110.4"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.224A>T",
          "hgvs_p": "p.Tyr75Phe",
          "transcript": "ENST00000911994.1",
          "protein_id": "ENSP00000582053.1",
          "transcript_support_level": null,
          "aa_start": 75,
          "aa_end": null,
          "aa_length": 110,
          "cds_start": 224,
          "cds_end": null,
          "cds_length": 333,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000911994.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.134A>T",
          "hgvs_p": "p.Tyr45Phe",
          "transcript": "ENST00000957588.1",
          "protein_id": "ENSP00000627647.1",
          "transcript_support_level": null,
          "aa_start": 45,
          "aa_end": null,
          "aa_length": 80,
          "cds_start": 134,
          "cds_end": null,
          "cds_length": 243,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957588.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.128A>T",
          "hgvs_p": "p.Tyr43Phe",
          "transcript": "ENST00000911993.1",
          "protein_id": "ENSP00000582052.1",
          "transcript_support_level": null,
          "aa_start": 43,
          "aa_end": null,
          "aa_length": 78,
          "cds_start": 128,
          "cds_end": null,
          "cds_length": 237,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000911993.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.113A>T",
          "hgvs_p": "p.Tyr38Phe",
          "transcript": "ENST00000898430.1",
          "protein_id": "ENSP00000568489.1",
          "transcript_support_level": null,
          "aa_start": 38,
          "aa_end": null,
          "aa_length": 73,
          "cds_start": 113,
          "cds_end": null,
          "cds_length": 222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000898430.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.56A>T",
          "hgvs_p": "p.Tyr19Phe",
          "transcript": "NM_001378437.1",
          "protein_id": "NP_001365366.1",
          "transcript_support_level": null,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 54,
          "cds_start": 56,
          "cds_end": null,
          "cds_length": 165,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001378437.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "c.56A>T",
          "hgvs_p": "p.Tyr19Phe",
          "transcript": "ENST00000898429.1",
          "protein_id": "ENSP00000568488.1",
          "transcript_support_level": null,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 54,
          "cds_start": 56,
          "cds_end": null,
          "cds_length": 165,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000898429.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "n.303A>T",
          "hgvs_p": null,
          "transcript": "NR_165631.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "NR_165631.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "DPM2",
          "gene_hgnc_id": 3006,
          "hgvs_c": "n.347-823A>T",
          "hgvs_p": null,
          "transcript": "ENST00000473360.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000473360.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000227218",
          "gene_hgnc_id": null,
          "hgvs_c": "n.143+1958T>A",
          "hgvs_p": null,
          "transcript": "ENST00000592240.6",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000592240.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000227218",
          "gene_hgnc_id": null,
          "hgvs_c": "n.126-3804T>A",
          "hgvs_p": null,
          "transcript": "ENST00000727590.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000727590.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000227218",
          "gene_hgnc_id": null,
          "hgvs_c": "n.100-3804T>A",
          "hgvs_p": null,
          "transcript": "ENST00000727591.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000727591.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000227218",
          "gene_hgnc_id": null,
          "hgvs_c": "n.63-3792T>A",
          "hgvs_p": null,
          "transcript": "ENST00000727592.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000727592.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000227218",
          "gene_hgnc_id": null,
          "hgvs_c": "n.143+1958T>A",
          "hgvs_p": null,
          "transcript": "ENST00000727593.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000727593.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000227218",
          "gene_hgnc_id": null,
          "hgvs_c": "n.63+2035T>A",
          "hgvs_p": null,
          "transcript": "ENST00000727594.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000727594.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000227218",
          "gene_hgnc_id": null,
          "hgvs_c": "n.261+161T>A",
          "hgvs_p": null,
          "transcript": "ENST00000727595.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000727595.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000227218",
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        {
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        {
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          "biotype": "protein_coding",
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      ],
      "gene_symbol": "DPM2",
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      "dbsnp": "rs779093563",
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      "computational_score_selected": 0.9567144513130188,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.009999999776482582,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.0825,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.2,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 5.613,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0.01,
      "spliceai_max_prediction": "Benign",
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      "dbscsnv_ada_prediction": null,
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      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3_Strong,BS1",
      "acmg_by_gene": [
        {
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          "benign_score": 4,
          "pathogenic_score": 6,
          "criteria": [
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            "PP3_Strong",
            "BS1"
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          "verdict": "Uncertain_significance",
          "transcript": "NM_003863.4",
          "gene_symbol": "DPM2",
          "hgnc_id": 3006,
          "effects": [
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        {
          "score": 6,
          "benign_score": 0,
          "pathogenic_score": 6,
          "criteria": [
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            "PP3_Strong"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "ENST00000727590.1",
          "gene_symbol": "ENSG00000227218",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.126-3804T>A",
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.