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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-129895929-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=129895929&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 8,
"criteria": [
"BP4",
"BP6_Moderate",
"BP7",
"BS2"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "FNBP1",
"hgnc_id": 17069,
"hgvs_c": "c.1839C>T",
"hgvs_p": "p.Gly613Gly",
"inheritance_mode": "AD",
"pathogenic_score": 0,
"score": -8,
"transcript": "NM_001438006.1",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4,BP6_Moderate,BP7,BS2",
"acmg_score": -8,
"allele_count_reference_population": 10,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.68,
"chr": "9",
"clinvar_classification": "Likely benign",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.2070000022649765,
"computational_source_selected": "REVEL",
"consequences": [
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 617,
"aa_ref": "G",
"aa_start": 585,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5420,
"cdna_start": 1969,
"cds_end": null,
"cds_length": 1854,
"cds_start": 1755,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_015033.3",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1755C>T",
"hgvs_p": "p.Gly585Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000446176.7",
"protein_coding": true,
"protein_id": "NP_055848.1",
"strand": false,
"transcript": "NM_015033.3",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 617,
"aa_ref": "G",
"aa_start": 585,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 5420,
"cdna_start": 1969,
"cds_end": null,
"cds_length": 1854,
"cds_start": 1755,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000446176.7",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1755C>T",
"hgvs_p": "p.Gly585Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_015033.3",
"protein_coding": true,
"protein_id": "ENSP00000413625.1",
"strand": false,
"transcript": "ENST00000446176.7",
"transcript_support_level": 1
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 645,
"aa_ref": "G",
"aa_start": 613,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5504,
"cdna_start": 2053,
"cds_end": null,
"cds_length": 1938,
"cds_start": 1839,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "NM_001438006.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1839C>T",
"hgvs_p": "p.Gly613Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001424935.1",
"strand": false,
"transcript": "NM_001438006.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 645,
"aa_ref": "G",
"aa_start": 613,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5504,
"cdna_start": 2053,
"cds_end": null,
"cds_length": 1938,
"cds_start": 1839,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000699492.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1839C>T",
"hgvs_p": "p.Gly613Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000514403.1",
"strand": false,
"transcript": "ENST00000699492.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 644,
"aa_ref": "G",
"aa_start": 608,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2706,
"cdna_start": 2038,
"cds_end": null,
"cds_length": 1935,
"cds_start": 1824,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_001439039.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1824C>T",
"hgvs_p": "p.Gly608Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425968.1",
"strand": false,
"transcript": "NM_001439039.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 622,
"aa_ref": "G",
"aa_start": 586,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2640,
"cdna_start": 1972,
"cds_end": null,
"cds_length": 1869,
"cds_start": 1758,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_001438159.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1758C>T",
"hgvs_p": "p.Gly586Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425088.1",
"strand": false,
"transcript": "NM_001438159.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 622,
"aa_ref": "G",
"aa_start": 586,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2618,
"cdna_start": 1950,
"cds_end": null,
"cds_length": 1869,
"cds_start": 1758,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000703559.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1758C>T",
"hgvs_p": "p.Gly586Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000515375.1",
"strand": false,
"transcript": "ENST00000703559.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 621,
"aa_ref": "G",
"aa_start": 585,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2637,
"cdna_start": 1969,
"cds_end": null,
"cds_length": 1866,
"cds_start": 1755,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_001438160.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1755C>T",
"hgvs_p": "p.Gly585Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425089.1",
"strand": false,
"transcript": "NM_001438160.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 618,
"aa_ref": "G",
"aa_start": 586,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3321,
"cdna_start": 1945,
"cds_end": null,
"cds_length": 1857,
"cds_start": 1758,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000946016.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1758C>T",
"hgvs_p": "p.Gly586Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000616075.1",
"strand": false,
"transcript": "ENST00000946016.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 617,
"aa_ref": "G",
"aa_start": 581,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2625,
"cdna_start": 1957,
"cds_end": null,
"cds_length": 1854,
"cds_start": 1743,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "NM_001438161.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1743C>T",
"hgvs_p": "p.Gly581Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425090.1",
"strand": false,
"transcript": "NM_001438161.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 616,
"aa_ref": "G",
"aa_start": 580,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2622,
"cdna_start": 1954,
"cds_end": null,
"cds_length": 1851,
"cds_start": 1740,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "NM_001439040.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1740C>T",
"hgvs_p": "p.Gly580Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425969.1",
"strand": false,
"transcript": "NM_001439040.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 616,
"aa_ref": "G",
"aa_start": 580,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2575,
"cdna_start": 1927,
"cds_end": null,
"cds_length": 1851,
"cds_start": 1740,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "ENST00000703532.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1740C>T",
"hgvs_p": "p.Gly580Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000515358.1",
"strand": false,
"transcript": "ENST00000703532.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 613,
"aa_ref": "G",
"aa_start": 584,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2040,
"cdna_start": 1949,
"cds_end": null,
"cds_length": 1843,
"cds_start": 1752,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000703560.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1752C>T",
"hgvs_p": "p.Gly584Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000515376.1",
"strand": false,
"transcript": "ENST00000703560.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 613,
"aa_ref": "G",
"aa_start": 581,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5408,
"cdna_start": 1957,
"cds_end": null,
"cds_length": 1842,
"cds_start": 1743,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "NM_001439041.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1743C>T",
"hgvs_p": "p.Gly581Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425970.1",
"strand": false,
"transcript": "NM_001439041.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 613,
"aa_ref": "G",
"aa_start": 581,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5408,
"cdna_start": 1957,
"cds_end": null,
"cds_length": 1842,
"cds_start": 1743,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "ENST00000907742.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1743C>T",
"hgvs_p": "p.Gly581Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000577801.1",
"strand": false,
"transcript": "ENST00000907742.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 612,
"aa_ref": "G",
"aa_start": 580,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5405,
"cdna_start": 1954,
"cds_end": null,
"cds_length": 1839,
"cds_start": 1740,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "NM_001439042.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1740C>T",
"hgvs_p": "p.Gly580Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425971.1",
"strand": false,
"transcript": "NM_001439042.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 612,
"aa_ref": "G",
"aa_start": 580,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5462,
"cdna_start": 2003,
"cds_end": null,
"cds_length": 1839,
"cds_start": 1740,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "ENST00000907739.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1740C>T",
"hgvs_p": "p.Gly580Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000577798.1",
"strand": false,
"transcript": "ENST00000907739.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 611,
"aa_ref": "G",
"aa_start": 575,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2607,
"cdna_start": 1939,
"cds_end": null,
"cds_length": 1836,
"cds_start": 1725,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_001439043.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1725C>T",
"hgvs_p": "p.Gly575Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425972.1",
"strand": false,
"transcript": "NM_001439043.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 608,
"aa_ref": "G",
"aa_start": 576,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3334,
"cdna_start": 1958,
"cds_end": null,
"cds_length": 1827,
"cds_start": 1728,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000946015.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1728C>T",
"hgvs_p": "p.Gly576Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000616074.1",
"strand": false,
"transcript": "ENST00000946015.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 607,
"aa_ref": "G",
"aa_start": 571,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2595,
"cdna_start": 1927,
"cds_end": null,
"cds_length": 1824,
"cds_start": 1713,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "NM_001439044.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1713C>T",
"hgvs_p": "p.Gly571Gly",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425973.1",
"strand": false,
"transcript": "NM_001439044.1",
"transcript_support_level": null
},
{
"aa_alt": "G",
"aa_end": null,
"aa_length": 607,
"aa_ref": "G",
"aa_start": 575,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5410,
"cdna_start": 1959,
"cds_end": null,
"cds_length": 1824,
"cds_start": 1725,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000946014.1",
"gene_hgnc_id": 17069,
"gene_symbol": "FNBP1",
"hgvs_c": "c.1725C>T",
"hgvs_p": "p.Gly575Gly",
"intron_rank": null,
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