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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-132198409-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=132198409&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 132198409,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_032536.4",
"consequences": [
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "NM_032536.4",
"protein_id": "NP_115925.2",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000393229.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_032536.4"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000393229.4",
"protein_id": "ENSP00000376921.3",
"transcript_support_level": 1,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_032536.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000393229.4"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946492.1",
"protein_id": "ENSP00000616551.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 636,
"cds_start": 657,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946492.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000922385.1",
"protein_id": "ENSP00000592444.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922385.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000922386.1",
"protein_id": "ENSP00000592445.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922386.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000922387.1",
"protein_id": "ENSP00000592446.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922387.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946488.1",
"protein_id": "ENSP00000616547.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946488.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946489.1",
"protein_id": "ENSP00000616548.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946489.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946490.1",
"protein_id": "ENSP00000616549.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946490.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946491.1",
"protein_id": "ENSP00000616550.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946491.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946495.1",
"protein_id": "ENSP00000616554.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946495.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946496.1",
"protein_id": "ENSP00000616555.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946496.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946497.1",
"protein_id": "ENSP00000616556.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946497.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946498.1",
"protein_id": "ENSP00000616557.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 530,
"cds_start": 657,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946498.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946494.1",
"protein_id": "ENSP00000616553.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 522,
"cds_start": 657,
"cds_end": null,
"cds_length": 1569,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946494.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "ENST00000946493.1",
"protein_id": "ENSP00000616552.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 485,
"cds_start": 657,
"cds_end": null,
"cds_length": 1458,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946493.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "XM_011519094.3",
"protein_id": "XP_011517396.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 636,
"cds_start": 657,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011519094.3"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "XM_011519096.3",
"protein_id": "XP_011517398.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 636,
"cds_start": 657,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011519096.3"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "XM_011519097.4",
"protein_id": "XP_011517399.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 636,
"cds_start": 657,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011519097.4"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "XM_011519098.3",
"protein_id": "XP_011517400.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 636,
"cds_start": 657,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011519098.3"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "XM_011519099.3",
"protein_id": "XP_011517401.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 636,
"cds_start": 657,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011519099.3"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTNG2",
"gene_hgnc_id": 14288,
"hgvs_c": "c.657C>A",
"hgvs_p": "p.Phe219Leu",
"transcript": "XM_011519100.3",
"protein_id": "XP_011517402.1",
"transcript_support_level": null,
"aa_start": 219,
"aa_end": null,
"aa_length": 636,
"cds_start": 657,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
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}