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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-133536770-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=133536770&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 133536770,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_014694.4",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "NM_014694.4",
"protein_id": "NP_055509.2",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000651351.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_014694.4"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000651351.2",
"protein_id": "ENSP00000498961.2",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_014694.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000651351.2"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"transcript": "ENST00000393061.7",
"protein_id": "ENSP00000376781.3",
"transcript_support_level": 1,
"aa_start": 129,
"aa_end": null,
"aa_length": 1060,
"cds_start": 385,
"cds_end": null,
"cds_length": 3183,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000393061.7"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000354484.8",
"protein_id": "ENSP00000346478.4",
"transcript_support_level": 1,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000354484.8"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000393060.1",
"protein_id": "ENSP00000376780.1",
"transcript_support_level": 1,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000393060.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "NM_001145320.2",
"protein_id": "NP_001138792.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001145320.2"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000857364.1",
"protein_id": "ENSP00000527423.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857364.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000857365.1",
"protein_id": "ENSP00000527424.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857365.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000952998.1",
"protein_id": "ENSP00000623057.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952998.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000953005.1",
"protein_id": "ENSP00000623064.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953005.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000953006.1",
"protein_id": "ENSP00000623065.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953006.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000953003.1",
"protein_id": "ENSP00000623062.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 943,
"cds_start": 58,
"cds_end": null,
"cds_length": 2832,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953003.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000953002.1",
"protein_id": "ENSP00000623061.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 927,
"cds_start": 58,
"cds_end": null,
"cds_length": 2784,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953002.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
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"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000857366.1",
"protein_id": "ENSP00000527425.1",
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"aa_start": 20,
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"aa_length": 917,
"cds_start": 58,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857366.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000952999.1",
"protein_id": "ENSP00000623058.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 912,
"cds_start": 58,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952999.1"
},
{
"aa_ref": "V",
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
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"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000953000.1",
"protein_id": "ENSP00000623059.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 912,
"cds_start": 58,
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"cds_length": 2739,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953000.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000953001.1",
"protein_id": "ENSP00000623060.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 912,
"cds_start": 58,
"cds_end": null,
"cds_length": 2739,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953001.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "ENST00000953004.1",
"protein_id": "ENSP00000623063.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 869,
"cds_start": 58,
"cds_end": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953004.1"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.385G>A",
"hgvs_p": "p.Val129Ile",
"transcript": "XM_011519241.3",
"protein_id": "XP_011517543.2",
"transcript_support_level": null,
"aa_start": 129,
"aa_end": null,
"aa_length": 1021,
"cds_start": 385,
"cds_end": null,
"cds_length": 3066,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011519241.3"
},
{
"aa_ref": "C",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.236G>A",
"hgvs_p": "p.Cys79Tyr",
"transcript": "XM_011519242.4",
"protein_id": "XP_011517544.1",
"transcript_support_level": null,
"aa_start": 79,
"aa_end": null,
"aa_length": 973,
"cds_start": 236,
"cds_end": null,
"cds_length": 2922,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011519242.4"
},
{
"aa_ref": "C",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.236G>A",
"hgvs_p": "p.Cys79Tyr",
"transcript": "XM_005272238.4",
"protein_id": "XP_005272295.1",
"transcript_support_level": null,
"aa_start": 79,
"aa_end": null,
"aa_length": 961,
"cds_start": 236,
"cds_end": null,
"cds_length": 2886,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005272238.4"
},
{
"aa_ref": "V",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile",
"transcript": "XM_005272239.3",
"protein_id": "XP_005272296.1",
"transcript_support_level": null,
"aa_start": 20,
"aa_end": null,
"aa_length": 951,
"cds_start": 58,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005272239.3"
}
],
"gene_symbol": "ADAMTSL2",
"gene_hgnc_id": 14631,
"dbsnp": "rs145897018",
"frequency_reference_population": 0.0013331516,
"hom_count_reference_population": 4,
"allele_count_reference_population": 2152,
"gnomad_exomes_af": 0.00134417,
"gnomad_genomes_af": 0.00122739,
"gnomad_exomes_ac": 1965,
"gnomad_genomes_ac": 187,
"gnomad_exomes_homalt": 4,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.005418688058853149,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.047,
"revel_prediction": "Benign",
"alphamissense_score": 0.0866,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.46,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.857,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6,BS1,BS2",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_014694.4",
"gene_symbol": "ADAMTSL2",
"hgnc_id": 14631,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.58G>A",
"hgvs_p": "p.Val20Ile"
}
],
"clinvar_disease": "ADAMTSL2-related disorder,Geleophysic dysplasia 1,not provided",
"clinvar_classification": "Conflicting classifications of pathogenicity",
"clinvar_review_status": "criteria provided, conflicting classifications",
"clinvar_submissions_summary": "US:3 LB:2",
"phenotype_combined": "Geleophysic dysplasia 1|not provided|ADAMTSL2-related disorder",
"pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
"custom_annotations": null
}
],
"message": null
}