← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-135522174-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=135522174&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 135522174,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001252618.2",
"consequences": [
{
"aa_ref": "M",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LCN1",
"gene_hgnc_id": 6525,
"hgvs_c": "c.218T>C",
"hgvs_p": "p.Met73Thr",
"transcript": "NM_002297.4",
"protein_id": "NP_002288.1",
"transcript_support_level": null,
"aa_start": 73,
"aa_end": null,
"aa_length": 176,
"cds_start": 218,
"cds_end": null,
"cds_length": 531,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000371781.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_002297.4"
},
{
"aa_ref": "M",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LCN1",
"gene_hgnc_id": 6525,
"hgvs_c": "c.218T>C",
"hgvs_p": "p.Met73Thr",
"transcript": "ENST00000371781.4",
"protein_id": "ENSP00000360846.3",
"transcript_support_level": 1,
"aa_start": 73,
"aa_end": null,
"aa_length": 176,
"cds_start": 218,
"cds_end": null,
"cds_length": 531,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_002297.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000371781.4"
},
{
"aa_ref": "M",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LCN1",
"gene_hgnc_id": 6525,
"hgvs_c": "c.218T>C",
"hgvs_p": "p.Met73Thr",
"transcript": "ENST00000263598.6",
"protein_id": "ENSP00000263598.2",
"transcript_support_level": 1,
"aa_start": 73,
"aa_end": null,
"aa_length": 176,
"cds_start": 218,
"cds_end": null,
"cds_length": 531,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000263598.6"
},
{
"aa_ref": "M",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LCN1",
"gene_hgnc_id": 6525,
"hgvs_c": "c.218T>C",
"hgvs_p": "p.Met73Thr",
"transcript": "NM_001252618.2",
"protein_id": "NP_001239547.1",
"transcript_support_level": null,
"aa_start": 73,
"aa_end": null,
"aa_length": 233,
"cds_start": 218,
"cds_end": null,
"cds_length": 702,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001252618.2"
},
{
"aa_ref": "M",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LCN1",
"gene_hgnc_id": 6525,
"hgvs_c": "c.218T>C",
"hgvs_p": "p.Met73Thr",
"transcript": "NM_001252619.2",
"protein_id": "NP_001239548.1",
"transcript_support_level": null,
"aa_start": 73,
"aa_end": null,
"aa_length": 230,
"cds_start": 218,
"cds_end": null,
"cds_length": 693,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001252619.2"
},
{
"aa_ref": "M",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LCN1",
"gene_hgnc_id": 6525,
"hgvs_c": "c.218T>C",
"hgvs_p": "p.Met73Thr",
"transcript": "NM_001252617.2",
"protein_id": "NP_001239546.1",
"transcript_support_level": null,
"aa_start": 73,
"aa_end": null,
"aa_length": 176,
"cds_start": 218,
"cds_end": null,
"cds_length": 531,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001252617.2"
},
{
"aa_ref": "M",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LCN1",
"gene_hgnc_id": 6525,
"hgvs_c": "c.218T>C",
"hgvs_p": "p.Met73Thr",
"transcript": "XM_011518675.3",
"protein_id": "XP_011516977.2",
"transcript_support_level": null,
"aa_start": 73,
"aa_end": null,
"aa_length": 226,
"cds_start": 218,
"cds_end": null,
"cds_length": 681,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011518675.3"
}
],
"gene_symbol": "LCN1",
"gene_hgnc_id": 6525,
"dbsnp": "rs1019068094",
"frequency_reference_population": 0.000001376292,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000137629,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.15269985795021057,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.019999999552965164,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.104,
"revel_prediction": "Benign",
"alphamissense_score": 0.2877,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.61,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.152,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.02,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001252618.2",
"gene_symbol": "LCN1",
"hgnc_id": 6525,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.218T>C",
"hgvs_p": "p.Met73Thr"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}