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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-136404149-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=136404149&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 136404149,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_001039707.2",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.1114G>A",
"hgvs_p": "p.Gly372Ser",
"transcript": "NM_001039707.2",
"protein_id": "NP_001034796.1",
"transcript_support_level": null,
"aa_start": 372,
"aa_end": null,
"aa_length": 435,
"cds_start": 1114,
"cds_end": null,
"cds_length": 1308,
"cdna_start": 1331,
"cdna_end": null,
"cdna_length": 2391,
"mane_select": "ENST00000357365.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.1114G>A",
"hgvs_p": "p.Gly372Ser",
"transcript": "ENST00000357365.8",
"protein_id": "ENSP00000349929.3",
"transcript_support_level": 5,
"aa_start": 372,
"aa_end": null,
"aa_length": 435,
"cds_start": 1114,
"cds_end": null,
"cds_length": 1308,
"cdna_start": 1331,
"cdna_end": null,
"cdna_length": 2391,
"mane_select": "NM_001039707.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.1045G>A",
"hgvs_p": "p.Gly349Ser",
"transcript": "ENST00000298537.11",
"protein_id": "ENSP00000298537.7",
"transcript_support_level": 1,
"aa_start": 349,
"aa_end": null,
"aa_length": 412,
"cds_start": 1045,
"cds_end": null,
"cds_length": 1239,
"cdna_start": 1257,
"cdna_end": null,
"cdna_length": 2314,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "n.196G>A",
"hgvs_p": null,
"transcript": "ENST00000466579.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 496,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.1045G>A",
"hgvs_p": "p.Gly349Ser",
"transcript": "NM_006643.4",
"protein_id": "NP_006634.3",
"transcript_support_level": null,
"aa_start": 349,
"aa_end": null,
"aa_length": 412,
"cds_start": 1045,
"cds_end": null,
"cds_length": 1239,
"cdna_start": 1262,
"cdna_end": null,
"cdna_length": 2322,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.895G>A",
"hgvs_p": "p.Gly299Ser",
"transcript": "NM_001039708.2",
"protein_id": "NP_001034797.1",
"transcript_support_level": null,
"aa_start": 299,
"aa_end": null,
"aa_length": 362,
"cds_start": 895,
"cds_end": null,
"cds_length": 1089,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 2172,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.895G>A",
"hgvs_p": "p.Gly299Ser",
"transcript": "ENST00000371725.7",
"protein_id": "ENSP00000360790.3",
"transcript_support_level": 5,
"aa_start": 299,
"aa_end": null,
"aa_length": 362,
"cds_start": 895,
"cds_end": null,
"cds_length": 1089,
"cdna_start": 1098,
"cdna_end": null,
"cdna_length": 2129,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.307G>A",
"hgvs_p": "p.Gly103Ser",
"transcript": "ENST00000417512.1",
"protein_id": "ENSP00000409255.1",
"transcript_support_level": 2,
"aa_start": 103,
"aa_end": null,
"aa_length": 166,
"cds_start": 307,
"cds_end": null,
"cds_length": 501,
"cdna_start": 309,
"cdna_end": null,
"cdna_length": 626,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.1261G>A",
"hgvs_p": "p.Gly421Ser",
"transcript": "XM_017014218.3",
"protein_id": "XP_016869707.1",
"transcript_support_level": null,
"aa_start": 421,
"aa_end": null,
"aa_length": 484,
"cds_start": 1261,
"cds_end": null,
"cds_length": 1455,
"cdna_start": 1478,
"cdna_end": null,
"cdna_length": 2538,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.1087G>A",
"hgvs_p": "p.Gly363Ser",
"transcript": "XM_005266050.5",
"protein_id": "XP_005266107.1",
"transcript_support_level": null,
"aa_start": 363,
"aa_end": null,
"aa_length": 426,
"cds_start": 1087,
"cds_end": null,
"cds_length": 1281,
"cdna_start": 1304,
"cdna_end": null,
"cdna_length": 2364,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.1018G>A",
"hgvs_p": "p.Gly340Ser",
"transcript": "XM_047422655.1",
"protein_id": "XP_047278611.1",
"transcript_support_level": null,
"aa_start": 340,
"aa_end": null,
"aa_length": 403,
"cds_start": 1018,
"cds_end": null,
"cds_length": 1212,
"cdna_start": 1235,
"cdna_end": null,
"cdna_length": 2295,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.1015G>A",
"hgvs_p": "p.Gly339Ser",
"transcript": "XM_011518157.3",
"protein_id": "XP_011516459.1",
"transcript_support_level": null,
"aa_start": 339,
"aa_end": null,
"aa_length": 402,
"cds_start": 1015,
"cds_end": null,
"cds_length": 1209,
"cdna_start": 1101,
"cdna_end": null,
"cdna_length": 2161,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.964G>A",
"hgvs_p": "p.Gly322Ser",
"transcript": "XM_005266051.4",
"protein_id": "XP_005266108.1",
"transcript_support_level": null,
"aa_start": 322,
"aa_end": null,
"aa_length": 385,
"cds_start": 964,
"cds_end": null,
"cds_length": 1158,
"cdna_start": 1181,
"cdna_end": null,
"cdna_length": 2241,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.937G>A",
"hgvs_p": "p.Gly313Ser",
"transcript": "XM_047422656.1",
"protein_id": "XP_047278612.1",
"transcript_support_level": null,
"aa_start": 313,
"aa_end": null,
"aa_length": 376,
"cds_start": 937,
"cds_end": null,
"cds_length": 1131,
"cdna_start": 1154,
"cdna_end": null,
"cdna_length": 2214,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "c.868G>A",
"hgvs_p": "p.Gly290Ser",
"transcript": "XM_047422657.1",
"protein_id": "XP_047278613.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 353,
"cds_start": 868,
"cds_end": null,
"cds_length": 1062,
"cdna_start": 1085,
"cdna_end": null,
"cdna_length": 2145,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "n.367G>A",
"hgvs_p": null,
"transcript": "ENST00000461693.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 869,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "n.531G>A",
"hgvs_p": null,
"transcript": "ENST00000486441.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 570,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"hgvs_c": "n.-41G>A",
"hgvs_p": null,
"transcript": "ENST00000481114.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 340,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "ENTR1",
"gene_hgnc_id": 10667,
"dbsnp": "rs763645086",
"frequency_reference_population": 0.000036580346,
"hom_count_reference_population": 0,
"allele_count_reference_population": 59,
"gnomad_exomes_af": 0.000036285,
"gnomad_genomes_af": 0.0000394146,
"gnomad_exomes_ac": 53,
"gnomad_genomes_ac": 6,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.3136669397354126,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.092,
"revel_prediction": "Benign",
"alphamissense_score": 0.0851,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.41,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.861,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 1,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4",
"acmg_by_gene": [
{
"score": 1,
"benign_score": 1,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001039707.2",
"gene_symbol": "ENTR1",
"hgnc_id": 10667,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1114G>A",
"hgvs_p": "p.Gly372Ser"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}