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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-136441147-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=136441147&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 136441147,
"ref": "A",
"alt": "G",
"effect": "3_prime_UTR_variant",
"transcript": "ENST00000684901.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "NM_014866.2",
"protein_id": "NP_055681.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2357,
"cds_start": -4,
"cds_end": null,
"cds_length": 7074,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9018,
"mane_select": "ENST00000684901.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "ENST00000684901.1",
"protein_id": "ENSP00000508822.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2357,
"cds_start": -4,
"cds_end": null,
"cds_length": 7074,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9018,
"mane_select": "NM_014866.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "ENST00000290037.10",
"protein_id": "ENSP00000290037.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2334,
"cds_start": -4,
"cds_end": null,
"cds_length": 7005,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8982,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "ENST00000453963.5",
"protein_id": "ENSP00000403525.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1059,
"cds_start": -4,
"cds_end": null,
"cds_length": 3180,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4834,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "ENST00000277537.10",
"protein_id": "ENSP00000277537.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 751,
"cds_start": -4,
"cds_end": null,
"cds_length": 2256,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3910,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "n.937T>C",
"hgvs_p": null,
"transcript": "ENST00000467838.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1988,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "n.*1010T>C",
"hgvs_p": null,
"transcript": "ENST00000689049.1",
"protein_id": "ENSP00000509752.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3150,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "n.1542T>C",
"hgvs_p": null,
"transcript": "ENST00000689439.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2189,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "NM_001438153.1",
"protein_id": "NP_001425082.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2379,
"cds_start": -4,
"cds_end": null,
"cds_length": 7140,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8962,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "NM_001438154.1",
"protein_id": "NP_001425083.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2379,
"cds_start": -4,
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"cds_length": 7140,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9134,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "NM_001438155.1",
"protein_id": "NP_001425084.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 2379,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 9133,
"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
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"gene_symbol": "SEC16A",
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"hgvs_c": "c.*608T>C",
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"transcript": "NM_001438156.1",
"protein_id": "NP_001425085.1",
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"cdna_start": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
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"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
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"transcript": "NM_001438157.1",
"protein_id": "NP_001425086.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
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"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
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"transcript": "NM_001438158.1",
"protein_id": "NP_001425087.1",
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},
{
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"strand": false,
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"3_prime_UTR_variant"
],
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"exon_count": 30,
"intron_rank": null,
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"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
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"transcript": "ENST00000313050.11",
"protein_id": "ENSP00000325827.7",
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"aa_start": null,
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"aa_length": 2357,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
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"exon_count": 29,
"intron_rank": null,
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"gene_symbol": "SEC16A",
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"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "NM_001276418.2",
"protein_id": "NP_001263347.1",
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},
{
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],
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"exon_count": 28,
"intron_rank": null,
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"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
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"transcript": "ENST00000371706.8",
"protein_id": "ENSP00000360771.4",
"transcript_support_level": 5,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
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"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "NM_001438003.1",
"protein_id": "NP_001424932.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*608T>C",
"hgvs_p": null,
"transcript": "ENST00000313084.9",
"protein_id": "ENSP00000317437.5",
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},
{
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],
"exon_rank": 13,
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"intron_rank": null,
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"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "n.*1010T>C",
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"transcript": "ENST00000689049.1",
"protein_id": "ENSP00000509752.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 31,
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"exon_count": 31,
"intron_rank": null,
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"gene_symbol": "SEC16A",
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"hgvs_c": "c.*608T>C",
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},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*1038T>C",
"hgvs_p": null,
"transcript": "XM_047424226.1",
"protein_id": "XP_047280182.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 2374,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 9549,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEC16A",
"gene_hgnc_id": 29006,
"hgvs_c": "c.*1038T>C",
"hgvs_p": null,
"transcript": "XM_047424227.1",
"protein_id": "XP_047280183.1",
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"aa_start": null,
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"aa_length": 2371,
"cds_start": -4,
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"cdna_start": null,
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