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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-15744627-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=15744627&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 15744627,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000380701.8",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2404C>T",
"hgvs_p": "p.Arg802Trp",
"transcript": "NM_173550.4",
"protein_id": "NP_775821.2",
"transcript_support_level": null,
"aa_start": 802,
"aa_end": null,
"aa_length": 1326,
"cds_start": 2404,
"cds_end": null,
"cds_length": 3981,
"cdna_start": 2775,
"cdna_end": null,
"cdna_length": 6553,
"mane_select": "ENST00000380701.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2404C>T",
"hgvs_p": "p.Arg802Trp",
"transcript": "ENST00000380701.8",
"protein_id": "ENSP00000370077.3",
"transcript_support_level": 1,
"aa_start": 802,
"aa_end": null,
"aa_length": 1326,
"cds_start": 2404,
"cds_end": null,
"cds_length": 3981,
"cdna_start": 2775,
"cdna_end": null,
"cdna_length": 6553,
"mane_select": "NM_173550.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "NM_001355547.1",
"protein_id": "NP_001342476.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1334,
"cds_start": 2428,
"cds_end": null,
"cds_length": 4005,
"cdna_start": 2539,
"cdna_end": null,
"cdna_length": 6319,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2149C>T",
"hgvs_p": "p.Arg717Trp",
"transcript": "NM_001348002.2",
"protein_id": "NP_001334931.1",
"transcript_support_level": null,
"aa_start": 717,
"aa_end": null,
"aa_length": 1241,
"cds_start": 2149,
"cds_end": null,
"cds_length": 3726,
"cdna_start": 2961,
"cdna_end": null,
"cdna_length": 6739,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.121C>T",
"hgvs_p": "p.Arg41Trp",
"transcript": "ENST00000449575.6",
"protein_id": "ENSP00000409055.2",
"transcript_support_level": 2,
"aa_start": 41,
"aa_end": null,
"aa_length": 468,
"cds_start": 121,
"cds_end": null,
"cds_length": 1407,
"cdna_start": 123,
"cdna_end": null,
"cdna_length": 2628,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_005251397.3",
"protein_id": "XP_005251454.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1334,
"cds_start": 2428,
"cds_end": null,
"cds_length": 4005,
"cdna_start": 2615,
"cdna_end": null,
"cdna_length": 6395,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_005251398.5",
"protein_id": "XP_005251455.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1334,
"cds_start": 2428,
"cds_end": null,
"cds_length": 4005,
"cdna_start": 2799,
"cdna_end": null,
"cdna_length": 6579,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_005251399.5",
"protein_id": "XP_005251456.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1334,
"cds_start": 2428,
"cds_end": null,
"cds_length": 4005,
"cdna_start": 2859,
"cdna_end": null,
"cdna_length": 6639,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_011517788.3",
"protein_id": "XP_011516090.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1334,
"cds_start": 2428,
"cds_end": null,
"cds_length": 4005,
"cdna_start": 2679,
"cdna_end": null,
"cdna_length": 6459,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_047422930.1",
"protein_id": "XP_047278886.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1334,
"cds_start": 2428,
"cds_end": null,
"cds_length": 4005,
"cdna_start": 2675,
"cdna_end": null,
"cdna_length": 6455,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_017014431.3",
"protein_id": "XP_016869920.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1325,
"cds_start": 2428,
"cds_end": null,
"cds_length": 3978,
"cdna_start": 2799,
"cdna_end": null,
"cdna_length": 6721,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_017014432.3",
"protein_id": "XP_016869921.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1324,
"cds_start": 2428,
"cds_end": null,
"cds_length": 3975,
"cdna_start": 2799,
"cdna_end": null,
"cdna_length": 4361,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_017014433.3",
"protein_id": "XP_016869922.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1302,
"cds_start": 2428,
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"cds_length": 3909,
"cdna_start": 2799,
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"cdna_length": 12182,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2296C>T",
"hgvs_p": "p.Arg766Trp",
"transcript": "XM_011517791.4",
"protein_id": "XP_011516093.1",
"transcript_support_level": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "R",
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_017014434.3",
"protein_id": "XP_016869923.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1290,
"cds_start": 2428,
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"cdna_start": 2799,
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"cdna_length": 6447,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2296C>T",
"hgvs_p": "p.Arg766Trp",
"transcript": "XM_047422931.1",
"protein_id": "XP_047278887.1",
"transcript_support_level": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2296C>T",
"hgvs_p": "p.Arg766Trp",
"transcript": "XM_047422932.1",
"protein_id": "XP_047278888.1",
"transcript_support_level": null,
"aa_start": 766,
"aa_end": null,
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"cds_start": 2296,
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"cdna_start": 2547,
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"cdna_length": 6327,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_047422933.1",
"protein_id": "XP_047278889.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1290,
"cds_start": 2428,
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"cdna_start": 2615,
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"mane_select": null,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2296C>T",
"hgvs_p": "p.Arg766Trp",
"transcript": "XM_047422934.1",
"protein_id": "XP_047278890.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2296C>T",
"hgvs_p": "p.Arg766Trp",
"transcript": "XM_047422935.1",
"protein_id": "XP_047278891.1",
"transcript_support_level": null,
"aa_start": 766,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
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"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_017014435.3",
"protein_id": "XP_016869924.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
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"cds_start": 2428,
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"cdna_start": 2799,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCDC171",
"gene_hgnc_id": 29828,
"hgvs_c": "c.2428C>T",
"hgvs_p": "p.Arg810Trp",
"transcript": "XM_017014436.3",
"protein_id": "XP_016869925.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 1277,
"cds_start": 2428,
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"cds_length": 3834,
"cdna_start": 2799,
"cdna_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "W",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
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"clinvar_submissions_summary": "null",
"phenotype_combined": "Prostate cancer",
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}
],
"message": null
}