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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-19279855-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=19279855&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 19279855,
"ref": "A",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000434457.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "NM_001330640.2",
"protein_id": "NP_001317569.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1958,
"cds_start": -4,
"cds_end": null,
"cds_length": 5877,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8143,
"mane_select": "ENST00000434457.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "ENST00000434457.7",
"protein_id": "ENSP00000473469.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1958,
"cds_start": -4,
"cds_end": null,
"cds_length": 5877,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8143,
"mane_select": "NM_001330640.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "NM_001386047.1",
"protein_id": "NP_001372976.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1958,
"cds_start": -4,
"cds_end": null,
"cds_length": 5877,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8233,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "NM_001386040.1",
"protein_id": "NP_001372969.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1952,
"cds_start": -4,
"cds_end": null,
"cds_length": 5859,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8125,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "NM_001386038.1",
"protein_id": "NP_001372967.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1945,
"cds_start": -4,
"cds_end": null,
"cds_length": 5838,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8104,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "NM_017925.7",
"protein_id": "NP_060395.5",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1909,
"cds_start": -4,
"cds_end": null,
"cds_length": 5730,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7996,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "ENST00000602925.5",
"protein_id": "ENSP00000473565.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1909,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 6831,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "NM_001386045.1",
"protein_id": "NP_001372974.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1894,
"cds_start": -4,
"cds_end": null,
"cds_length": 5685,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8078,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "NM_001386037.1",
"protein_id": "NP_001372966.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1889,
"cds_start": -4,
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"cds_length": 5670,
"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 32,
"intron_rank": 2,
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"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.305+3376A>T",
"hgvs_p": null,
"transcript": "NM_001386026.2",
"protein_id": "NP_001372955.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 32,
"intron_rank": 2,
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"gene_symbol": "DENND4C",
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"hgvs_c": "c.305+3376A>T",
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"transcript": "NM_001386030.1",
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},
{
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],
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"gene_symbol": "DENND4C",
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},
{
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],
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"gene_symbol": "DENND4C",
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"hgvs_c": "c.305+3376A>T",
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"transcript": "NM_001386046.1",
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},
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],
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"gene_symbol": "DENND4C",
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},
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],
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"transcript": "NM_001386043.1",
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},
{
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],
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"gene_symbol": "DENND4C",
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],
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},
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],
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"hgvs_c": "c.-513+3376A>T",
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],
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},
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],
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"gene_symbol": "DENND4C",
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"transcript": "NM_001386031.1",
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},
{
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],
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"gene_symbol": "DENND4C",
"gene_hgnc_id": 26079,
"hgvs_c": "c.-1226+3376A>T",
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"transcript": "NM_001386039.1",
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