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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-33922599-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=33922599&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 33922599,
"ref": "T",
"alt": "C",
"effect": "missense_variant,splice_region_variant",
"transcript": "NM_018449.4",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "NM_001370062.2",
"protein_id": "NP_001356991.2",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000379238.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001370062.2"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "ENST00000379238.7",
"protein_id": "ENSP00000368540.2",
"transcript_support_level": 5,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001370062.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000379238.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "n.1933A>G",
"hgvs_p": null,
"transcript": "ENST00000379235.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000379235.5"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3388A>G",
"hgvs_p": "p.Ser1130Gly",
"transcript": "ENST00000862381.1",
"protein_id": "ENSP00000532440.1",
"transcript_support_level": null,
"aa_start": 1130,
"aa_end": null,
"aa_length": 1160,
"cds_start": 3388,
"cds_end": null,
"cds_length": 3483,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000862381.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3295A>G",
"hgvs_p": "p.Ser1099Gly",
"transcript": "ENST00000862380.1",
"protein_id": "ENSP00000532439.1",
"transcript_support_level": null,
"aa_start": 1099,
"aa_end": null,
"aa_length": 1129,
"cds_start": 3295,
"cds_end": null,
"cds_length": 3390,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000862380.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3295A>G",
"hgvs_p": "p.Ser1099Gly",
"transcript": "ENST00000932762.1",
"protein_id": "ENSP00000602821.1",
"transcript_support_level": null,
"aa_start": 1099,
"aa_end": null,
"aa_length": 1129,
"cds_start": 3295,
"cds_end": null,
"cds_length": 3390,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932762.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3283A>G",
"hgvs_p": "p.Ser1095Gly",
"transcript": "ENST00000862374.1",
"protein_id": "ENSP00000532433.1",
"transcript_support_level": null,
"aa_start": 1095,
"aa_end": null,
"aa_length": 1125,
"cds_start": 3283,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000862374.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3283A>G",
"hgvs_p": "p.Ser1095Gly",
"transcript": "ENST00000932759.1",
"protein_id": "ENSP00000602818.1",
"transcript_support_level": null,
"aa_start": 1095,
"aa_end": null,
"aa_length": 1125,
"cds_start": 3283,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932759.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3283A>G",
"hgvs_p": "p.Ser1095Gly",
"transcript": "ENST00000932767.1",
"protein_id": "ENSP00000602826.1",
"transcript_support_level": null,
"aa_start": 1095,
"aa_end": null,
"aa_length": 1125,
"cds_start": 3283,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932767.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3283A>G",
"hgvs_p": "p.Ser1095Gly",
"transcript": "ENST00000956121.1",
"protein_id": "ENSP00000626180.1",
"transcript_support_level": null,
"aa_start": 1095,
"aa_end": null,
"aa_length": 1125,
"cds_start": 3283,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956121.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3283A>G",
"hgvs_p": "p.Ser1095Gly",
"transcript": "ENST00000956125.1",
"protein_id": "ENSP00000626184.1",
"transcript_support_level": null,
"aa_start": 1095,
"aa_end": null,
"aa_length": 1125,
"cds_start": 3283,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956125.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "NM_001370059.2",
"protein_id": "NP_001356988.2",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001370059.2"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "NM_018449.4",
"protein_id": "NP_060919.4",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_018449.4"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "ENST00000682239.1",
"protein_id": "ENSP00000507293.1",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000682239.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "ENST00000684158.1",
"protein_id": "ENSP00000508372.1",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000684158.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "ENST00000862367.1",
"protein_id": "ENSP00000532427.1",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000862367.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "ENST00000862372.1",
"protein_id": "ENSP00000532432.1",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000862372.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "ENST00000932760.1",
"protein_id": "ENSP00000602819.1",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932760.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "ENST00000956118.1",
"protein_id": "ENSP00000626177.1",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956118.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3265A>G",
"hgvs_p": "p.Ser1089Gly",
"transcript": "ENST00000956120.1",
"protein_id": "ENSP00000626179.1",
"transcript_support_level": null,
"aa_start": 1089,
"aa_end": null,
"aa_length": 1119,
"cds_start": 3265,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956120.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UBAP2",
"gene_hgnc_id": 14185,
"hgvs_c": "c.3184A>G",
"hgvs_p": "p.Ser1062Gly",
"transcript": "ENST00000862377.1",
"protein_id": "ENSP00000532436.1",
"transcript_support_level": null,
"aa_start": 1062,
"aa_end": null,
"aa_length": 1092,
"cds_start": 3184,
"cds_end": null,
"cds_length": 3279,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000862377.1"
},
{
"aa_ref": "S",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
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}
],
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}