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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 9-34659834-CGG-GGA (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=34659834&ref=CGG&alt=GGA&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PM5"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "IL11RA",
          "hgnc_id": 5967,
          "hgvs_c": "c.886_888delCGGinsGGA",
          "hgvs_p": "p.Arg296Gly",
          "inheritance_mode": "AR",
          "pathogenic_score": 2,
          "score": 2,
          "transcript": "NM_001142784.3",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "gene_symbol": "ENSG00000258728",
          "hgnc_id": null,
          "hgvs_c": "n.*3271_*3273delCGGinsGGA",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "ENST00000691183.1",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM5",
      "acmg_score": 2,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "GGA",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "9",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 422,
          "aa_ref": "R",
          "aa_start": 296,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1722,
          "cdna_start": 935,
          "cds_end": null,
          "cds_length": 1269,
          "cds_start": 886,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001142784.3",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.886_888delCGGinsGGA",
          "hgvs_p": "p.Arg296Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000441545.7",
          "protein_coding": true,
          "protein_id": "NP_001136256.1",
          "strand": true,
          "transcript": "NM_001142784.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 422,
          "aa_ref": "R",
          "aa_start": 296,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1722,
          "cdna_start": 935,
          "cds_end": null,
          "cds_length": 1269,
          "cds_start": 886,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000441545.7",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.886_888delCGGinsGGA",
          "hgvs_p": "p.Arg296Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001142784.3",
          "protein_coding": true,
          "protein_id": "ENSP00000394391.3",
          "strand": true,
          "transcript": "ENST00000441545.7",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 422,
          "aa_ref": "R",
          "aa_start": 296,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1728,
          "cdna_start": 951,
          "cds_end": null,
          "cds_length": 1269,
          "cds_start": 886,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000318041.13",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.886_888delCGGinsGGA",
          "hgvs_p": "p.Arg296Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000326500.8",
          "strand": true,
          "transcript": "ENST00000318041.13",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 390,
          "aa_ref": "R",
          "aa_start": 296,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1388,
          "cdna_start": 886,
          "cds_end": null,
          "cds_length": 1173,
          "cds_start": 886,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000602473.5",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.886_888delCGGinsGGA",
          "hgvs_p": "p.Arg296Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000473647.1",
          "strand": true,
          "transcript": "ENST00000602473.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 477,
          "aa_ref": "R",
          "aa_start": 351,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3209,
          "cdna_start": 2438,
          "cds_end": null,
          "cds_length": 1434,
          "cds_start": 1051,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000957059.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.1051_1053delCGGinsGGA",
          "hgvs_p": "p.Arg351Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000627118.1",
          "strand": true,
          "transcript": "ENST00000957059.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 430,
          "aa_ref": "R",
          "aa_start": 304,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1716,
          "cdna_start": 945,
          "cds_end": null,
          "cds_length": 1293,
          "cds_start": 910,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000957054.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.910_912delCGGinsGGA",
          "hgvs_p": "p.Arg304Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000627113.1",
          "strand": true,
          "transcript": "ENST00000957054.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 427,
          "aa_ref": "R",
          "aa_start": 301,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1710,
          "cdna_start": 931,
          "cds_end": null,
          "cds_length": 1284,
          "cds_start": 901,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000902566.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.901_903delCGGinsGGA",
          "hgvs_p": "p.Arg301Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000572625.1",
          "strand": true,
          "transcript": "ENST00000902566.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 427,
          "aa_ref": "R",
          "aa_start": 301,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1793,
          "cdna_start": 1027,
          "cds_end": null,
          "cds_length": 1284,
          "cds_start": 901,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000957061.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.901_903delCGGinsGGA",
          "hgvs_p": "p.Arg301Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000627120.1",
          "strand": true,
          "transcript": "ENST00000957061.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 426,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1734,
          "cdna_start": 947,
          "cds_end": null,
          "cds_length": 1281,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000555003.6",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000450565.2",
          "strand": true,
          "transcript": "ENST00000555003.6",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 426,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2071,
          "cdna_start": 1306,
          "cds_end": null,
          "cds_length": 1281,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000902558.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000572617.1",
          "strand": true,
          "transcript": "ENST00000902558.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 426,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1740,
          "cdna_start": 953,
          "cds_end": null,
          "cds_length": 1281,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000902560.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000572619.1",
          "strand": true,
          "transcript": "ENST00000902560.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 426,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1824,
          "cdna_start": 1037,
          "cds_end": null,
          "cds_length": 1281,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000902561.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000572620.1",
          "strand": true,
          "transcript": "ENST00000902561.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 426,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1807,
          "cdna_start": 1042,
          "cds_end": null,
          "cds_length": 1281,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000902569.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000572628.1",
          "strand": true,
          "transcript": "ENST00000902569.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 426,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1777,
          "cdna_start": 1005,
          "cds_end": null,
          "cds_length": 1281,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000902571.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000572629.1",
          "strand": true,
          "transcript": "ENST00000902571.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 426,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2922,
          "cdna_start": 2151,
          "cds_end": null,
          "cds_length": 1281,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000957058.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000627117.1",
          "strand": true,
          "transcript": "ENST00000957058.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 426,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2379,
          "cdna_start": 1599,
          "cds_end": null,
          "cds_length": 1281,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000957065.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000627124.1",
          "strand": true,
          "transcript": "ENST00000957065.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 425,
          "aa_ref": "R",
          "aa_start": 299,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1740,
          "cdna_start": 956,
          "cds_end": null,
          "cds_length": 1278,
          "cds_start": 895,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000957051.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.895_897delCGGinsGGA",
          "hgvs_p": "p.Arg299Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000627110.1",
          "strand": true,
          "transcript": "ENST00000957051.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 424,
          "aa_ref": "R",
          "aa_start": 300,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1705,
          "cdna_start": 940,
          "cds_end": null,
          "cds_length": 1275,
          "cds_start": 898,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000957053.1",
          "gene_hgnc_id": 5967,
          "gene_symbol": "IL11RA",
          "hgvs_c": "c.898_900delCGGinsGGA",
          "hgvs_p": "p.Arg300Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000627112.1",
          "strand": true,
          "transcript": "ENST00000957053.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 422,
          "aa_ref": "R",
          "aa_start": 296,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.