← Back to variant description

GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 9-35685655-CTCA-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=35685655&ref=CTCA&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "9",
      "pos": 35685655,
      "ref": "CTCA",
      "alt": "C",
      "effect": "disruptive_inframe_deletion",
      "transcript": "NM_003289.4",
      "consequences": [
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "NM_003289.4",
          "protein_id": "NP_003280.2",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 284,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 855,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000645482.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_003289.4"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000645482.3",
          "protein_id": "ENSP00000496494.2",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 284,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 855,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_003289.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000645482.3"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000378292.9",
          "protein_id": "ENSP00000367542.3",
          "transcript_support_level": 1,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 284,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 855,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000378292.9"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000951580.1",
          "protein_id": "ENSP00000621639.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 289,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 870,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951580.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "NM_001301226.2",
          "protein_id": "NP_001288155.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 284,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 855,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001301226.2"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "NM_001301227.2",
          "protein_id": "NP_001288156.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 284,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 855,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001301227.2"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "NM_213674.1",
          "protein_id": "NP_998839.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 284,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 855,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_213674.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000329305.6",
          "protein_id": "ENSP00000367541.1",
          "transcript_support_level": 2,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 284,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 855,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000329305.6"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000647435.1",
          "protein_id": "ENSP00000495440.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 284,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 855,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000647435.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000951581.1",
          "protein_id": "ENSP00000621640.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 282,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 849,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951581.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000951585.1",
          "protein_id": "ENSP00000621644.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 264,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 795,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951585.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000951582.1",
          "protein_id": "ENSP00000621641.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 263,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 792,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951582.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.240_242delTGA",
          "hgvs_p": "p.Asp80del",
          "transcript": "ENST00000951578.1",
          "protein_id": "ENSP00000621637.1",
          "transcript_support_level": null,
          "aa_start": 80,
          "aa_end": null,
          "aa_length": 243,
          "cds_start": 240,
          "cds_end": null,
          "cds_length": 732,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951578.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.237_239delTGA",
          "hgvs_p": "p.Asp79del",
          "transcript": "ENST00000951577.1",
          "protein_id": "ENSP00000621636.1",
          "transcript_support_level": null,
          "aa_start": 79,
          "aa_end": null,
          "aa_length": 242,
          "cds_start": 237,
          "cds_end": null,
          "cds_length": 729,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951577.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.237_239delTGA",
          "hgvs_p": "p.Asp79del",
          "transcript": "ENST00000951584.1",
          "protein_id": "ENSP00000621643.1",
          "transcript_support_level": null,
          "aa_start": 79,
          "aa_end": null,
          "aa_length": 242,
          "cds_start": 237,
          "cds_end": null,
          "cds_length": 729,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951584.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "ENST00000951583.1",
          "protein_id": "ENSP00000621642.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 228,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 687,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951583.1"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "XM_017015088.3",
          "protein_id": "XP_016870577.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 303,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 912,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017015088.3"
        },
        {
          "aa_ref": "DE",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del",
          "transcript": "XM_047423827.1",
          "protein_id": "XP_047279783.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 213,
          "cds_start": 363,
          "cds_end": null,
          "cds_length": 642,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047423827.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.190-174_190-172delTGA",
          "hgvs_p": null,
          "transcript": "ENST00000951579.1",
          "protein_id": "ENSP00000621638.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 200,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 603,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000951579.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "n.446_448delTGA",
          "hgvs_p": null,
          "transcript": "ENST00000471212.5",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000471212.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "n.249_251delTGA",
          "hgvs_p": null,
          "transcript": "ENST00000604975.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000604975.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "n.198_200delTGA",
          "hgvs_p": null,
          "transcript": "ENST00000643485.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000643485.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "c.-192_-190delTGA",
          "hgvs_p": null,
          "transcript": "ENST00000607559.1",
          "protein_id": "ENSP00000475952.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 111,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 336,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000607559.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TPM2",
          "gene_hgnc_id": 12011,
          "hgvs_c": "n.-115_-113delTGA",
          "hgvs_p": null,
          "transcript": "ENST00000486018.1",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000486018.1"
        }
      ],
      "gene_symbol": "TPM2",
      "gene_hgnc_id": 12011,
      "dbsnp": "rs1554658995",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": 0.09000000357627869,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 7.902,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.09,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 7,
      "acmg_classification": "Likely_pathogenic",
      "acmg_criteria": "PM1,PM2,PM4_Supporting,PP5_Moderate",
      "acmg_by_gene": [
        {
          "score": 7,
          "benign_score": 0,
          "pathogenic_score": 7,
          "criteria": [
            "PM1",
            "PM2",
            "PM4_Supporting",
            "PP5_Moderate"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "NM_003289.4",
          "gene_symbol": "TPM2",
          "hgnc_id": 12011,
          "effects": [
            "disruptive_inframe_deletion"
          ],
          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.363_365delTGA",
          "hgvs_p": "p.Asp121del"
        }
      ],
      "clinvar_disease": " distal, type 1A,Arthrogryposis",
      "clinvar_classification": "Likely pathogenic",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LP:1",
      "phenotype_combined": "Arthrogryposis, distal, type 1A",
      "pathogenicity_classification_combined": "Likely pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.