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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-36162429-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=36162429&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 36162429,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_001287013.2",
"consequences": [
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.372C>T",
"hgvs_p": "p.Asp124Asp",
"transcript": "NM_022343.4",
"protein_id": "NP_071738.1",
"transcript_support_level": null,
"aa_start": 124,
"aa_end": null,
"aa_length": 154,
"cds_start": 372,
"cds_end": null,
"cds_length": 465,
"cdna_start": 418,
"cdna_end": null,
"cdna_length": 1895,
"mane_select": "ENST00000377960.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_022343.4"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.372C>T",
"hgvs_p": "p.Asp124Asp",
"transcript": "ENST00000377960.9",
"protein_id": "ENSP00000367196.4",
"transcript_support_level": 1,
"aa_start": 124,
"aa_end": null,
"aa_length": 154,
"cds_start": 372,
"cds_end": null,
"cds_length": 465,
"cdna_start": 418,
"cdna_end": null,
"cdna_length": 1895,
"mane_select": "NM_022343.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000377960.9"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.417C>T",
"hgvs_p": "p.Asp139Asp",
"transcript": "NM_001287013.2",
"protein_id": "NP_001273942.1",
"transcript_support_level": null,
"aa_start": 139,
"aa_end": null,
"aa_length": 169,
"cds_start": 417,
"cds_end": null,
"cds_length": 510,
"cdna_start": 504,
"cdna_end": null,
"cdna_length": 1981,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001287013.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.294C>T",
"hgvs_p": "p.Asp98Asp",
"transcript": "NM_001287010.2",
"protein_id": "NP_001273939.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 128,
"cds_start": 294,
"cds_end": null,
"cds_length": 387,
"cdna_start": 340,
"cdna_end": null,
"cdna_length": 1817,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001287010.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.294C>T",
"hgvs_p": "p.Asp98Asp",
"transcript": "ENST00000377959.5",
"protein_id": "ENSP00000367195.1",
"transcript_support_level": 3,
"aa_start": 98,
"aa_end": null,
"aa_length": 128,
"cds_start": 294,
"cds_end": null,
"cds_length": 387,
"cdna_start": 331,
"cdna_end": null,
"cdna_length": 812,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000377959.5"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.159C>T",
"hgvs_p": "p.Asp53Asp",
"transcript": "ENST00000885959.1",
"protein_id": "ENSP00000556018.1",
"transcript_support_level": null,
"aa_start": 53,
"aa_end": null,
"aa_length": 83,
"cds_start": 159,
"cds_end": null,
"cds_length": 252,
"cdna_start": 377,
"cdna_end": null,
"cdna_length": 1854,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000885959.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.126C>T",
"hgvs_p": "p.Asp42Asp",
"transcript": "NM_001287014.2",
"protein_id": "NP_001273943.1",
"transcript_support_level": null,
"aa_start": 42,
"aa_end": null,
"aa_length": 72,
"cds_start": 126,
"cds_end": null,
"cds_length": 219,
"cdna_start": 213,
"cdna_end": null,
"cdna_length": 1690,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001287014.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.126C>T",
"hgvs_p": "p.Asp42Asp",
"transcript": "ENST00000619700.1",
"protein_id": "ENSP00000478768.1",
"transcript_support_level": 3,
"aa_start": 42,
"aa_end": null,
"aa_length": 72,
"cds_start": 126,
"cds_end": null,
"cds_length": 219,
"cdna_start": 161,
"cdna_end": null,
"cdna_length": 1645,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000619700.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.81C>T",
"hgvs_p": "p.Asp27Asp",
"transcript": "ENST00000885960.1",
"protein_id": "ENSP00000556019.1",
"transcript_support_level": null,
"aa_start": 27,
"aa_end": null,
"aa_length": 57,
"cds_start": 81,
"cds_end": null,
"cds_length": 174,
"cdna_start": 189,
"cdna_end": null,
"cdna_length": 1669,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000885960.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.*187C>T",
"hgvs_p": null,
"transcript": "NM_001287011.2",
"protein_id": "NP_001273940.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 104,
"cds_start": null,
"cds_end": null,
"cds_length": 315,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2025,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001287011.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.*1C>T",
"hgvs_p": null,
"transcript": "NM_001287012.2",
"protein_id": "NP_001273941.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 62,
"cds_start": null,
"cds_end": null,
"cds_length": 189,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1713,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001287012.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.*1C>T",
"hgvs_p": null,
"transcript": "ENST00000396613.7",
"protein_id": "ENSP00000379857.4",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 62,
"cds_start": null,
"cds_end": null,
"cds_length": 189,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1917,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000396613.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "c.*1C>T",
"hgvs_p": null,
"transcript": "XM_024447416.2",
"protein_id": "XP_024303184.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 77,
"cds_start": null,
"cds_end": null,
"cds_length": 234,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1806,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024447416.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "n.1229C>T",
"hgvs_p": null,
"transcript": "ENST00000474050.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2702,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000474050.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "n.799C>T",
"hgvs_p": null,
"transcript": "NR_104637.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2276,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_104637.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "n.407C>T",
"hgvs_p": null,
"transcript": "NR_104638.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1891,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_104638.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "n.553C>T",
"hgvs_p": null,
"transcript": "NR_104639.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2030,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_104639.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "n.440C>T",
"hgvs_p": null,
"transcript": "NR_104640.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1917,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_104640.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"hgvs_c": "n.324C>T",
"hgvs_p": null,
"transcript": "NR_104641.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1808,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_104641.1"
}
],
"gene_symbol": "GLIPR2",
"gene_hgnc_id": 18007,
"dbsnp": "rs73648727",
"frequency_reference_population": 0.00033767917,
"hom_count_reference_population": 0,
"allele_count_reference_population": 545,
"gnomad_exomes_af": 0.000195668,
"gnomad_genomes_af": 0.00170061,
"gnomad_exomes_ac": 286,
"gnomad_genomes_ac": 259,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.550000011920929,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.55,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -2.113,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7"
],
"verdict": "Benign",
"transcript": "NM_001287013.2",
"gene_symbol": "GLIPR2",
"hgnc_id": 18007,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.417C>T",
"hgvs_p": "p.Asp139Asp"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Benign/Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:1 B:2",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Benign/Likely benign",
"custom_annotations": null
}
],
"message": null
}