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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-6248035-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=6248035&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 6248035,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000682010.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "NM_033439.4",
"protein_id": "NP_254274.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 270,
"cds_start": -4,
"cds_end": null,
"cds_length": 813,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2685,
"mane_select": "ENST00000682010.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "ENST00000682010.1",
"protein_id": "ENSP00000507310.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 270,
"cds_start": -4,
"cds_end": null,
"cds_length": 813,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2685,
"mane_select": "NM_033439.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "ENST00000381434.7",
"protein_id": "ENSP00000370842.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 270,
"cds_start": -4,
"cds_end": null,
"cds_length": 813,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2641,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "ENST00000611532.4",
"protein_id": "ENSP00000478858.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 228,
"cds_start": -4,
"cds_end": null,
"cds_length": 687,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 757,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "NM_001314044.2",
"protein_id": "NP_001300973.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 270,
"cds_start": -4,
"cds_end": null,
"cds_length": 813,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2693,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "NM_001314045.2",
"protein_id": "NP_001300974.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 270,
"cds_start": -4,
"cds_end": null,
"cds_length": 813,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2701,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "NM_001314046.2",
"protein_id": "NP_001300975.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 264,
"cds_start": -4,
"cds_end": null,
"cds_length": 795,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2667,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "NM_001314047.2",
"protein_id": "NP_001300976.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 264,
"cds_start": -4,
"cds_end": null,
"cds_length": 795,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2675,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "NM_001199640.2",
"protein_id": "NP_001186569.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 228,
"cds_start": -4,
"cds_end": null,
"cds_length": 687,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2559,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "NM_001314048.2",
"protein_id": "NP_001300977.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 228,
"cds_start": -4,
"cds_end": null,
"cds_length": 687,
"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "ENST00000456383.3",
"protein_id": "ENSP00000414238.2",
"transcript_support_level": 5,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 2,
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"gene_symbol": "IL33",
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"hgvs_c": "c.92-5517C>T",
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"transcript": "NM_001199641.2",
"protein_id": "NP_001186570.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 5,
"intron_rank": 2,
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"gene_symbol": "IL33",
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"hgvs_c": "c.92-5517C>T",
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"transcript": "ENST00000417746.6",
"protein_id": "ENSP00000394039.2",
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"aa_start": null,
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"cds_start": -4,
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},
{
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"strand": false,
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],
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"gene_symbol": "ENSG00000294323",
"gene_hgnc_id": null,
"hgvs_c": "n.187-19740G>A",
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"transcript": "ENST00000722750.1",
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},
{
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],
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"transcript": "ENST00000722751.1",
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"feature": null
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 3,
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"gene_symbol": "ENSG00000294323",
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"hgvs_c": "n.308-4212G>A",
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},
{
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],
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},
{
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],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 3,
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"gene_symbol": "ENSG00000294323",
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"hgvs_c": "n.187-4212G>A",
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"transcript": "ENST00000722754.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "XM_047424060.1",
"protein_id": "XP_047280016.1",
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},
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"strand": true,
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],
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"intron_rank": 4,
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},
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],
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},
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],
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"intron_rank": 4,
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"gene_symbol": "IL33",
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"hgvs_c": "c.92-2439C>T",
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"transcript": "XM_017015285.2",
"protein_id": "XP_016870774.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "IL33",
"gene_hgnc_id": 16028,
"hgvs_c": "c.92-2439C>T",
"hgvs_p": null,
"transcript": "XM_047424063.1",
"protein_id": "XP_047280019.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
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{
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],
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"splice_prediction_selected": "Benign",
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{
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"verdict": "Benign",
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{
"score": -12,
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"verdict": "Benign",
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{
"score": -12,
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],
"clinvar_disease": "",
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"custom_annotations": null
}
],
"message": null
}