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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-7046901-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=7046901&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 7046901,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "ENST00000381309.8",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "NM_015061.6",
"protein_id": "NP_055876.2",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 1056,
"cds_start": 2299,
"cds_end": null,
"cds_length": 3171,
"cdna_start": 2547,
"cdna_end": null,
"cdna_length": 4338,
"mane_select": "ENST00000381309.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "ENST00000381309.8",
"protein_id": "ENSP00000370710.3",
"transcript_support_level": 1,
"aa_start": 767,
"aa_end": null,
"aa_length": 1056,
"cds_start": 2299,
"cds_end": null,
"cds_length": 3171,
"cdna_start": 2547,
"cdna_end": null,
"cdna_length": 4338,
"mane_select": "NM_015061.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "ENST00000536108.7",
"protein_id": "ENSP00000440656.4",
"transcript_support_level": 1,
"aa_start": 767,
"aa_end": null,
"aa_length": 813,
"cds_start": 2299,
"cds_end": null,
"cds_length": 2442,
"cdna_start": 2451,
"cdna_end": null,
"cdna_length": 3406,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "NM_001353997.3",
"protein_id": "NP_001340926.1",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 1089,
"cds_start": 2299,
"cds_end": null,
"cds_length": 3270,
"cdna_start": 2547,
"cdna_end": null,
"cdna_length": 4437,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "ENST00000381306.7",
"protein_id": "ENSP00000370707.3",
"transcript_support_level": 2,
"aa_start": 767,
"aa_end": null,
"aa_length": 1047,
"cds_start": 2299,
"cds_end": null,
"cds_length": 3144,
"cdna_start": 2864,
"cdna_end": null,
"cdna_length": 4601,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "NM_001304339.4",
"protein_id": "NP_001291268.1",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 1023,
"cds_start": 2299,
"cds_end": null,
"cds_length": 3072,
"cdna_start": 2547,
"cdna_end": null,
"cdna_length": 4331,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2365C>G",
"hgvs_p": "p.Gln789Glu",
"transcript": "NM_001146696.2",
"protein_id": "NP_001140168.1",
"transcript_support_level": null,
"aa_start": 789,
"aa_end": null,
"aa_length": 835,
"cds_start": 2365,
"cds_end": null,
"cds_length": 2508,
"cdna_start": 2451,
"cdna_end": null,
"cdna_length": 3406,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "NM_001146695.4",
"protein_id": "NP_001140167.1",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 813,
"cds_start": 2299,
"cds_end": null,
"cds_length": 2442,
"cdna_start": 2547,
"cdna_end": null,
"cdna_length": 3502,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "ENST00000543771.5",
"protein_id": "ENSP00000445427.1",
"transcript_support_level": 2,
"aa_start": 767,
"aa_end": null,
"aa_length": 813,
"cds_start": 2299,
"cds_end": null,
"cds_length": 2442,
"cdna_start": 2377,
"cdna_end": null,
"cdna_length": 3332,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.1534C>G",
"hgvs_p": "p.Gln512Glu",
"transcript": "NM_001304340.4",
"protein_id": "NP_001291269.1",
"transcript_support_level": null,
"aa_start": 512,
"aa_end": null,
"aa_length": 801,
"cds_start": 1534,
"cds_end": null,
"cds_length": 2406,
"cdna_start": 2149,
"cdna_end": null,
"cdna_length": 3940,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "NM_001353998.3",
"protein_id": "NP_001340927.1",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 793,
"cds_start": 2299,
"cds_end": null,
"cds_length": 2382,
"cdna_start": 2547,
"cdna_end": null,
"cdna_length": 3393,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.1360C>G",
"hgvs_p": "p.Gln454Glu",
"transcript": "ENST00000428870.6",
"protein_id": "ENSP00000405739.2",
"transcript_support_level": 2,
"aa_start": 454,
"aa_end": null,
"aa_length": 743,
"cds_start": 1360,
"cds_end": null,
"cds_length": 2232,
"cdna_start": 1549,
"cdna_end": null,
"cdna_length": 3039,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.988C>G",
"hgvs_p": "p.Gln330Glu",
"transcript": "NM_001353999.3",
"protein_id": "NP_001340928.1",
"transcript_support_level": null,
"aa_start": 330,
"aa_end": null,
"aa_length": 652,
"cds_start": 988,
"cds_end": null,
"cds_length": 1959,
"cdna_start": 3471,
"cdna_end": null,
"cdna_length": 5361,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.988C>G",
"hgvs_p": "p.Gln330Glu",
"transcript": "NM_001354000.3",
"protein_id": "NP_001340929.1",
"transcript_support_level": null,
"aa_start": 330,
"aa_end": null,
"aa_length": 619,
"cds_start": 988,
"cds_end": null,
"cds_length": 1860,
"cdna_start": 2684,
"cdna_end": null,
"cdna_length": 4475,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.988C>G",
"hgvs_p": "p.Gln330Glu",
"transcript": "NM_001354001.3",
"protein_id": "NP_001340930.1",
"transcript_support_level": null,
"aa_start": 330,
"aa_end": null,
"aa_length": 619,
"cds_start": 988,
"cds_end": null,
"cds_length": 1860,
"cdna_start": 3471,
"cdna_end": null,
"cdna_length": 5262,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.331C>G",
"hgvs_p": "p.Gln111Glu",
"transcript": "ENST00000420847.2",
"protein_id": "ENSP00000400127.1",
"transcript_support_level": 5,
"aa_start": 111,
"aa_end": null,
"aa_length": 353,
"cds_start": 331,
"cds_end": null,
"cds_length": 1064,
"cdna_start": 331,
"cdna_end": null,
"cdna_length": 1064,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.2299C>G",
"hgvs_p": "p.Gln767Glu",
"transcript": "XM_017014498.3",
"protein_id": "XP_016869987.1",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 999,
"cds_start": 2299,
"cds_end": null,
"cds_length": 3000,
"cdna_start": 2547,
"cdna_end": null,
"cdna_length": 4167,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.1756C>G",
"hgvs_p": "p.Gln586Glu",
"transcript": "XM_047423026.1",
"protein_id": "XP_047278982.1",
"transcript_support_level": null,
"aa_start": 586,
"aa_end": null,
"aa_length": 908,
"cds_start": 1756,
"cds_end": null,
"cds_length": 2727,
"cdna_start": 2147,
"cdna_end": null,
"cdna_length": 4037,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.1756C>G",
"hgvs_p": "p.Gln586Glu",
"transcript": "XM_047423027.1",
"protein_id": "XP_047278983.1",
"transcript_support_level": null,
"aa_start": 586,
"aa_end": null,
"aa_length": 908,
"cds_start": 1756,
"cds_end": null,
"cds_length": 2727,
"cdna_start": 1940,
"cdna_end": null,
"cdna_length": 3830,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.1756C>G",
"hgvs_p": "p.Gln586Glu",
"transcript": "XM_047423029.1",
"protein_id": "XP_047278985.1",
"transcript_support_level": null,
"aa_start": 586,
"aa_end": null,
"aa_length": 908,
"cds_start": 1756,
"cds_end": null,
"cds_length": 2727,
"cdna_start": 2071,
"cdna_end": null,
"cdna_length": 3961,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.1690C>G",
"hgvs_p": "p.Gln564Glu",
"transcript": "XM_047423028.1",
"protein_id": "XP_047278984.1",
"transcript_support_level": null,
"aa_start": 564,
"aa_end": null,
"aa_length": 886,
"cds_start": 1690,
"cds_end": null,
"cds_length": 2661,
"cdna_start": 1693,
"cdna_end": null,
"cdna_length": 3583,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM4C",
"gene_hgnc_id": 17071,
"hgvs_c": "c.1360C>G",
"hgvs_p": "p.Gln454Glu",
"transcript": "XM_047423030.1",
"protein_id": "XP_047278986.1",
"transcript_support_level": null,
"aa_start": 454,
"aa_end": null,
"aa_length": 776,
"cds_start": 1360,
"cds_end": null,
"cds_length": 2331,
"cdna_start": 1504,
"cdna_end": null,
"cdna_length": 3394,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
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{
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}
],
"message": null
}