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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 9-81584467-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=81584467&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "9",
      "pos": 81584467,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001303103.2",
      "consequences": [
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2186A>G",
          "hgvs_p": "p.Tyr729Cys",
          "transcript": "NM_005077.5",
          "protein_id": "NP_005068.2",
          "transcript_support_level": null,
          "aa_start": 729,
          "aa_end": null,
          "aa_length": 770,
          "cds_start": 2186,
          "cds_end": null,
          "cds_length": 2313,
          "cdna_start": 3493,
          "cdna_end": null,
          "cdna_length": 4135,
          "mane_select": "ENST00000376499.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_005077.5"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2186A>G",
          "hgvs_p": "p.Tyr729Cys",
          "transcript": "ENST00000376499.8",
          "protein_id": "ENSP00000365682.3",
          "transcript_support_level": 1,
          "aa_start": 729,
          "aa_end": null,
          "aa_length": 770,
          "cds_start": 2186,
          "cds_end": null,
          "cds_length": 2313,
          "cdna_start": 3493,
          "cdna_end": null,
          "cdna_length": 4135,
          "mane_select": "NM_005077.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000376499.8"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2321A>G",
          "hgvs_p": "p.Tyr774Cys",
          "transcript": "ENST00000946444.1",
          "protein_id": "ENSP00000616503.1",
          "transcript_support_level": null,
          "aa_start": 774,
          "aa_end": null,
          "aa_length": 815,
          "cds_start": 2321,
          "cds_end": null,
          "cds_length": 2448,
          "cdna_start": 3605,
          "cdna_end": null,
          "cdna_length": 3806,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946444.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2288A>G",
          "hgvs_p": "p.Tyr763Cys",
          "transcript": "ENST00000946428.1",
          "protein_id": "ENSP00000616487.1",
          "transcript_support_level": null,
          "aa_start": 763,
          "aa_end": null,
          "aa_length": 804,
          "cds_start": 2288,
          "cds_end": null,
          "cds_length": 2415,
          "cdna_start": 3694,
          "cdna_end": null,
          "cdna_length": 4336,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946428.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2285A>G",
          "hgvs_p": "p.Tyr762Cys",
          "transcript": "ENST00000946430.1",
          "protein_id": "ENSP00000616489.1",
          "transcript_support_level": null,
          "aa_start": 762,
          "aa_end": null,
          "aa_length": 803,
          "cds_start": 2285,
          "cds_end": null,
          "cds_length": 2412,
          "cdna_start": 3673,
          "cdna_end": null,
          "cdna_length": 4313,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946430.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2285A>G",
          "hgvs_p": "p.Tyr762Cys",
          "transcript": "ENST00000946435.1",
          "protein_id": "ENSP00000616494.1",
          "transcript_support_level": null,
          "aa_start": 762,
          "aa_end": null,
          "aa_length": 803,
          "cds_start": 2285,
          "cds_end": null,
          "cds_length": 2412,
          "cdna_start": 3578,
          "cdna_end": null,
          "cdna_length": 4217,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946435.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2282A>G",
          "hgvs_p": "p.Tyr761Cys",
          "transcript": "ENST00000946437.1",
          "protein_id": "ENSP00000616496.1",
          "transcript_support_level": null,
          "aa_start": 761,
          "aa_end": null,
          "aa_length": 802,
          "cds_start": 2282,
          "cds_end": null,
          "cds_length": 2409,
          "cdna_start": 3566,
          "cdna_end": null,
          "cdna_length": 4206,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946437.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2243A>G",
          "hgvs_p": "p.Tyr748Cys",
          "transcript": "ENST00000946433.1",
          "protein_id": "ENSP00000616492.1",
          "transcript_support_level": null,
          "aa_start": 748,
          "aa_end": null,
          "aa_length": 789,
          "cds_start": 2243,
          "cds_end": null,
          "cds_length": 2370,
          "cdna_start": 3550,
          "cdna_end": null,
          "cdna_length": 4188,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946433.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2216A>G",
          "hgvs_p": "p.Tyr739Cys",
          "transcript": "NM_001303103.2",
          "protein_id": "NP_001290032.1",
          "transcript_support_level": null,
          "aa_start": 739,
          "aa_end": null,
          "aa_length": 780,
          "cds_start": 2216,
          "cds_end": null,
          "cds_length": 2343,
          "cdna_start": 3523,
          "cdna_end": null,
          "cdna_length": 4165,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001303103.2"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2213A>G",
          "hgvs_p": "p.Tyr738Cys",
          "transcript": "ENST00000946443.1",
          "protein_id": "ENSP00000616502.1",
          "transcript_support_level": null,
          "aa_start": 738,
          "aa_end": null,
          "aa_length": 779,
          "cds_start": 2213,
          "cds_end": null,
          "cds_length": 2340,
          "cdna_start": 3555,
          "cdna_end": null,
          "cdna_length": 3758,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000946443.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2210A>G",
          "hgvs_p": "p.Tyr737Cys",
          "transcript": "ENST00000946442.1",
          "protein_id": "ENSP00000616501.1",
          "transcript_support_level": null,
          "aa_start": 737,
          "aa_end": null,
          "aa_length": 778,
          "cds_start": 2210,
          "cds_end": null,
          "cds_length": 2337,
          "cdna_start": 3367,
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          "cdna_length": 4005,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2183A>G",
          "hgvs_p": "p.Tyr728Cys",
          "transcript": "ENST00000946426.1",
          "protein_id": "ENSP00000616485.1",
          "transcript_support_level": null,
          "aa_start": 728,
          "aa_end": null,
          "aa_length": 769,
          "cds_start": 2183,
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          "cdna_start": 3624,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2183A>G",
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          "transcript": "ENST00000946429.1",
          "protein_id": "ENSP00000616488.1",
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          "cds_start": 2183,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000946429.1"
        },
        {
          "aa_ref": "Y",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "TLE1",
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          "hgvs_c": "c.2180A>G",
          "hgvs_p": "p.Tyr727Cys",
          "transcript": "ENST00000946438.1",
          "protein_id": "ENSP00000616497.1",
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        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "TLE1",
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          "transcript": "ENST00000946432.1",
          "protein_id": "ENSP00000616491.1",
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          "cdna_start": 3453,
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          "cdna_length": 4093,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000946432.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 19,
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          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2141A>G",
          "hgvs_p": "p.Tyr714Cys",
          "transcript": "NM_001303104.2",
          "protein_id": "NP_001290033.1",
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          "cds_start": 2141,
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          "cdna_length": 4090,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001303104.2"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2138A>G",
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        {
          "aa_ref": "Y",
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          "intron_rank": null,
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          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2123A>G",
          "hgvs_p": "p.Tyr708Cys",
          "transcript": "ENST00000946434.1",
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
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          "protein_coding": true,
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          "consequences": [
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          ],
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          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
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          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2096A>G",
          "hgvs_p": "p.Tyr699Cys",
          "transcript": "ENST00000879081.1",
          "protein_id": "ENSP00000549140.1",
          "transcript_support_level": null,
          "aa_start": 699,
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          "aa_length": 740,
          "cds_start": 2096,
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          "cdna_start": 3423,
          "cdna_end": null,
          "cdna_length": 4060,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000879081.1"
        },
        {
          "aa_ref": "Y",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TLE1",
          "gene_hgnc_id": 11837,
          "hgvs_c": "c.2093A>G",
          "hgvs_p": "p.Tyr698Cys",
          "transcript": "ENST00000879086.1",
          "protein_id": "ENSP00000549145.1",
          "transcript_support_level": null,
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      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
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  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.