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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-84670322-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=84670322&ref=A&alt=G&genome=hg38&allGenes=true"
API Response
json
{
"variants": [
{
"chr": "9",
"pos": 84670322,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "NM_006180.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "NM_006180.6",
"protein_id": "NP_006171.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 838,
"cds_start": -4,
"cds_end": null,
"cds_length": 2517,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8666,
"mane_select": "ENST00000277120.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000277120.8",
"protein_id": "ENSP00000277120.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 838,
"cds_start": -4,
"cds_end": null,
"cds_length": 2517,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8666,
"mane_select": "NM_006180.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000323115.11",
"protein_id": "ENSP00000314586.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 810,
"cds_start": -4,
"cds_end": null,
"cds_length": 2433,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8723,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000376208.6",
"protein_id": "ENSP00000365381.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": -4,
"cds_end": null,
"cds_length": 1614,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8633,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000359847.4",
"protein_id": "ENSP00000352906.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 477,
"cds_start": -4,
"cds_end": null,
"cds_length": 1434,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7286,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000395882.6",
"protein_id": "ENSP00000379221.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 477,
"cds_start": -4,
"cds_end": null,
"cds_length": 1434,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7499,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-427A>G",
"hgvs_p": null,
"transcript": "ENST00000687148.1",
"protein_id": "ENSP00000510717.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 477,
"cds_start": -4,
"cds_end": null,
"cds_length": 1434,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6956,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000686324.1",
"protein_id": "ENSP00000510134.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 838,
"cds_start": -4,
"cds_end": null,
"cds_length": 2517,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8795,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "NM_001018064.3",
"protein_id": "NP_001018074.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 822,
"cds_start": -4,
"cds_end": null,
"cds_length": 2469,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8647,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "NM_001369532.1",
"protein_id": "NP_001356461.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 822,
"cds_start": -4,
"cds_end": null,
"cds_length": 2469,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8931,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "NM_001369533.1",
"protein_id": "NP_001356462.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 822,
"cds_start": -4,
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"cds_length": 2469,
"cdna_start": null,
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"cdna_length": 8722,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000376213.6",
"protein_id": "ENSP00000365386.1",
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"aa_start": null,
"aa_end": null,
"aa_length": 822,
"cds_start": -4,
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"cds_length": 2469,
"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000686259.1",
"protein_id": "ENSP00000509743.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 822,
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{
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"strand": true,
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 3,
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"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
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"transcript": "ENST00000686496.1",
"protein_id": "ENSP00000510060.1",
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"feature": null
},
{
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"strand": true,
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"intron_variant"
],
"exon_rank": null,
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"exon_count": 18,
"intron_rank": 1,
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"gene_symbol": "NTRK2",
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"hgvs_c": "c.-372-55A>G",
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"transcript": "ENST00000691788.1",
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000692181.1",
"protein_id": "ENSP00000510619.1",
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},
{
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],
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"gene_symbol": "NTRK2",
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"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "NM_001369534.1",
"protein_id": "NP_001356463.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000687386.1",
"protein_id": "ENSP00000508723.1",
"transcript_support_level": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
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"transcript": "NM_001018065.2",
"protein_id": "NP_001018075.1",
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},
{
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"strand": true,
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"intron_variant"
],
"exon_rank": null,
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"intron_rank": 2,
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"gene_symbol": "NTRK2",
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"hgvs_c": "c.-372-55A>G",
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"transcript": "NM_001369537.1",
"protein_id": "NP_001356466.1",
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},
{
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
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"transcript": "ENST00000685720.1",
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000687636.1",
"protein_id": "ENSP00000508829.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 553,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 8475,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NTRK2",
"gene_hgnc_id": 8032,
"hgvs_c": "c.-372-55A>G",
"hgvs_p": null,
"transcript": "ENST00000693539.1",
"protein_id": "ENSP00000510640.1",
"transcript_support_level": null,
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"cdna_start": null,
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{
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],
"clinvar_disease": "not provided",
"clinvar_classification": "Benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "B:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Benign",
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}
],
"message": null
}