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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-85603900-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=85603900&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 85603900,
"ref": "A",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000357081.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2336-7451T>G",
"hgvs_p": null,
"transcript": "NM_001330701.2",
"protein_id": "NP_001317630.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1226,
"cds_start": -4,
"cds_end": null,
"cds_length": 3681,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4464,
"mane_select": "ENST00000357081.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2336-7451T>G",
"hgvs_p": null,
"transcript": "ENST00000357081.8",
"protein_id": "ENSP00000349592.3",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1226,
"cds_start": -4,
"cds_end": null,
"cds_length": 3681,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4464,
"mane_select": "NM_001330701.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2216-7451T>G",
"hgvs_p": null,
"transcript": "ENST00000376083.7",
"protein_id": "ENSP00000365251.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1186,
"cds_start": -4,
"cds_end": null,
"cds_length": 3561,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4208,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2492-7451T>G",
"hgvs_p": null,
"transcript": "NM_001286715.1",
"protein_id": "NP_001273644.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1278,
"cds_start": -4,
"cds_end": null,
"cds_length": 3837,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4474,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2492-7451T>G",
"hgvs_p": null,
"transcript": "ENST00000337006.8",
"protein_id": "ENSP00000338512.5",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1278,
"cds_start": -4,
"cds_end": null,
"cds_length": 3837,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4473,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2372-7451T>G",
"hgvs_p": null,
"transcript": "NM_001286717.1",
"protein_id": "NP_001273646.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1238,
"cds_start": -4,
"cds_end": null,
"cds_length": 3717,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4354,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2372-7451T>G",
"hgvs_p": null,
"transcript": "ENST00000628899.1",
"protein_id": "ENSP00000487074.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1238,
"cds_start": -4,
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"cds_length": 3717,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4222,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2216-7451T>G",
"hgvs_p": null,
"transcript": "NM_015239.3",
"protein_id": "NP_056054.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1186,
"cds_start": -4,
"cds_end": null,
"cds_length": 3561,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4344,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2336-7451T>G",
"hgvs_p": null,
"transcript": "XM_005251848.3",
"protein_id": "XP_005251905.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1226,
"cds_start": -4,
"cds_end": null,
"cds_length": 3681,
"cdna_start": null,
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"cdna_length": 4966,
"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 29,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "AGTPBP1",
"gene_hgnc_id": 17258,
"hgvs_c": "c.2336-7451T>G",
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"transcript": "XM_047423086.1",
"protein_id": "XP_047279042.1",
"transcript_support_level": null,
"aa_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 28,
"intron_rank": 19,
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"gene_symbol": "AGTPBP1",
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"hgvs_c": "c.2336-7451T>G",
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"transcript": "XM_047423087.1",
"protein_id": "XP_047279043.1",
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},
{
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],
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},
{
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],
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"gene_symbol": "AGTPBP1",
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},
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],
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"gene_symbol": "AGTPBP1",
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},
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],
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],
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},
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],
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"gene_symbol": "AGTPBP1",
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"hgvs_c": "c.2336-7451T>G",
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},
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],
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"gene_symbol": "AGTPBP1",
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"hgvs_c": "c.2336-7451T>G",
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"transcript": "XM_011518418.3",
"protein_id": "XP_011516720.1",
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},
{
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],
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"gene_symbol": "AGTPBP1",
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"hgvs_c": "c.2336-7451T>G",
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}
],
"message": null
}