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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-86035513-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=86035513&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 86035513,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_016548.4",
"consequences": [
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "NM_016548.4",
"protein_id": "NP_057632.2",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000388712.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_016548.4"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "ENST00000388712.7",
"protein_id": "ENSP00000373364.3",
"transcript_support_level": 1,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_016548.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000388712.7"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "ENST00000388711.7",
"protein_id": "ENSP00000373363.3",
"transcript_support_level": 1,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000388711.7"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.912C>T",
"hgvs_p": "p.Phe304Phe",
"transcript": "ENST00000944326.1",
"protein_id": "ENSP00000614385.1",
"transcript_support_level": null,
"aa_start": 304,
"aa_end": null,
"aa_length": 415,
"cds_start": 912,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944326.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.909C>T",
"hgvs_p": "p.Phe303Phe",
"transcript": "ENST00000910229.1",
"protein_id": "ENSP00000580288.1",
"transcript_support_level": null,
"aa_start": 303,
"aa_end": null,
"aa_length": 414,
"cds_start": 909,
"cds_end": null,
"cds_length": 1245,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910229.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.909C>T",
"hgvs_p": "p.Phe303Phe",
"transcript": "ENST00000910233.1",
"protein_id": "ENSP00000580292.1",
"transcript_support_level": null,
"aa_start": 303,
"aa_end": null,
"aa_length": 414,
"cds_start": 909,
"cds_end": null,
"cds_length": 1245,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910233.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "NM_177937.3",
"protein_id": "NP_808800.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_177937.3"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "ENST00000910231.1",
"protein_id": "ENSP00000580290.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910231.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "ENST00000910232.1",
"protein_id": "ENSP00000580291.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910232.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "ENST00000910235.1",
"protein_id": "ENSP00000580294.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910235.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "ENST00000910236.1",
"protein_id": "ENSP00000580295.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910236.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe",
"transcript": "ENST00000910237.1",
"protein_id": "ENSP00000580296.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 401,
"cds_start": 870,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910237.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.867C>T",
"hgvs_p": "p.Phe289Phe",
"transcript": "ENST00000910228.1",
"protein_id": "ENSP00000580287.1",
"transcript_support_level": null,
"aa_start": 289,
"aa_end": null,
"aa_length": 400,
"cds_start": 867,
"cds_end": null,
"cds_length": 1203,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910228.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.867C>T",
"hgvs_p": "p.Phe289Phe",
"transcript": "ENST00000936265.1",
"protein_id": "ENSP00000606324.1",
"transcript_support_level": null,
"aa_start": 289,
"aa_end": null,
"aa_length": 400,
"cds_start": 867,
"cds_end": null,
"cds_length": 1203,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000936265.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.843C>T",
"hgvs_p": "p.Phe281Phe",
"transcript": "ENST00000936266.1",
"protein_id": "ENSP00000606325.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 392,
"cds_start": 843,
"cds_end": null,
"cds_length": 1179,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000936266.1"
},
{
"aa_ref": "F",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.690C>T",
"hgvs_p": "p.Phe230Phe",
"transcript": "ENST00000944327.1",
"protein_id": "ENSP00000614386.1",
"transcript_support_level": null,
"aa_start": 230,
"aa_end": null,
"aa_length": 341,
"cds_start": 690,
"cds_end": null,
"cds_length": 1026,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944327.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.757+835C>T",
"hgvs_p": null,
"transcript": "ENST00000910230.1",
"protein_id": "ENSP00000580289.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 315,
"cds_start": null,
"cds_end": null,
"cds_length": 948,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910230.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "c.757+835C>T",
"hgvs_p": null,
"transcript": "ENST00000910234.1",
"protein_id": "ENSP00000580293.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 315,
"cds_start": null,
"cds_end": null,
"cds_length": 948,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000910234.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "n.579C>T",
"hgvs_p": null,
"transcript": "ENST00000464314.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000464314.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"hgvs_c": "n.*75C>T",
"hgvs_p": null,
"transcript": "ENST00000257504.10",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000257504.10"
}
],
"gene_symbol": "GOLM1",
"gene_hgnc_id": 15451,
"dbsnp": "rs143510742",
"frequency_reference_population": 0.00028276545,
"hom_count_reference_population": 0,
"allele_count_reference_population": 456,
"gnomad_exomes_af": 0.000192374,
"gnomad_genomes_af": 0.00115174,
"gnomad_exomes_ac": 281,
"gnomad_genomes_ac": 175,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8100000023841858,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.81,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.802,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7"
],
"verdict": "Benign",
"transcript": "NM_016548.4",
"gene_symbol": "GOLM1",
"hgnc_id": 15451,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.870C>T",
"hgvs_p": "p.Phe290Phe"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "B:2",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Benign",
"custom_annotations": null
}
],
"message": null
}