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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-91214377-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=91214377&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 91214377,
"ref": "T",
"alt": "A",
"effect": "stop_gained",
"transcript": "NM_001698.3",
"consequences": [
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.991A>T",
"hgvs_p": "p.Lys331*",
"transcript": "NM_001698.3",
"protein_id": "NP_001689.1",
"transcript_support_level": null,
"aa_start": 331,
"aa_end": null,
"aa_length": 339,
"cds_start": 991,
"cds_end": null,
"cds_length": 1020,
"cdna_start": 1020,
"cdna_end": null,
"cdna_length": 1574,
"mane_select": "ENST00000375731.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.991A>T",
"hgvs_p": "p.Lys331*",
"transcript": "ENST00000375731.9",
"protein_id": "ENSP00000364883.5",
"transcript_support_level": 1,
"aa_start": 331,
"aa_end": null,
"aa_length": 339,
"cds_start": 991,
"cds_end": null,
"cds_length": 1020,
"cdna_start": 1020,
"cdna_end": null,
"cdna_length": 1574,
"mane_select": "NM_001698.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.904A>T",
"hgvs_p": "p.Lys302*",
"transcript": "ENST00000303617.5",
"protein_id": "ENSP00000307334.5",
"transcript_support_level": 1,
"aa_start": 302,
"aa_end": null,
"aa_length": 310,
"cds_start": 904,
"cds_end": null,
"cds_length": 933,
"cdna_start": 928,
"cdna_end": null,
"cdna_length": 1490,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.904A>T",
"hgvs_p": "p.Lys302*",
"transcript": "NM_001306190.2",
"protein_id": "NP_001293119.1",
"transcript_support_level": null,
"aa_start": 302,
"aa_end": null,
"aa_length": 310,
"cds_start": 904,
"cds_end": null,
"cds_length": 933,
"cdna_start": 933,
"cdna_end": null,
"cdna_length": 1487,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.664A>T",
"hgvs_p": "p.Lys222*",
"transcript": "NM_001351431.2",
"protein_id": "NP_001338360.1",
"transcript_support_level": null,
"aa_start": 222,
"aa_end": null,
"aa_length": 230,
"cds_start": 664,
"cds_end": null,
"cds_length": 693,
"cdna_start": 1090,
"cdna_end": null,
"cdna_length": 1644,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.664A>T",
"hgvs_p": "p.Lys222*",
"transcript": "NM_001351432.2",
"protein_id": "NP_001338361.1",
"transcript_support_level": null,
"aa_start": 222,
"aa_end": null,
"aa_length": 230,
"cds_start": 664,
"cds_end": null,
"cds_length": 693,
"cdna_start": 1182,
"cdna_end": null,
"cdna_length": 1736,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.616A>T",
"hgvs_p": "p.Lys206*",
"transcript": "NM_001351433.2",
"protein_id": "NP_001338362.1",
"transcript_support_level": null,
"aa_start": 206,
"aa_end": null,
"aa_length": 214,
"cds_start": 616,
"cds_end": null,
"cds_length": 645,
"cdna_start": 1042,
"cdna_end": null,
"cdna_length": 1596,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.1021A>T",
"hgvs_p": "p.Lys341*",
"transcript": "XM_005252066.4",
"protein_id": "XP_005252123.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 349,
"cds_start": 1021,
"cds_end": null,
"cds_length": 1050,
"cdna_start": 1050,
"cdna_end": null,
"cdna_length": 1604,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.973A>T",
"hgvs_p": "p.Lys325*",
"transcript": "XM_005252067.5",
"protein_id": "XP_005252124.1",
"transcript_support_level": null,
"aa_start": 325,
"aa_end": null,
"aa_length": 333,
"cds_start": 973,
"cds_end": null,
"cds_length": 1002,
"cdna_start": 1002,
"cdna_end": null,
"cdna_length": 1556,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.943A>T",
"hgvs_p": "p.Lys315*",
"transcript": "XM_017014849.2",
"protein_id": "XP_016870338.1",
"transcript_support_level": null,
"aa_start": 315,
"aa_end": null,
"aa_length": 323,
"cds_start": 943,
"cds_end": null,
"cds_length": 972,
"cdna_start": 972,
"cdna_end": null,
"cdna_length": 1526,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.934A>T",
"hgvs_p": "p.Lys312*",
"transcript": "XM_006717150.4",
"protein_id": "XP_006717213.1",
"transcript_support_level": null,
"aa_start": 312,
"aa_end": null,
"aa_length": 320,
"cds_start": 934,
"cds_end": null,
"cds_length": 963,
"cdna_start": 963,
"cdna_end": null,
"cdna_length": 1517,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.856A>T",
"hgvs_p": "p.Lys286*",
"transcript": "XM_047423525.1",
"protein_id": "XP_047279481.1",
"transcript_support_level": null,
"aa_start": 286,
"aa_end": null,
"aa_length": 294,
"cds_start": 856,
"cds_end": null,
"cds_length": 885,
"cdna_start": 885,
"cdna_end": null,
"cdna_length": 1439,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.667A>T",
"hgvs_p": "p.Lys223*",
"transcript": "XM_047423527.1",
"protein_id": "XP_047279483.1",
"transcript_support_level": null,
"aa_start": 223,
"aa_end": null,
"aa_length": 231,
"cds_start": 667,
"cds_end": null,
"cds_length": 696,
"cdna_start": 2697,
"cdna_end": null,
"cdna_length": 3251,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.664A>T",
"hgvs_p": "p.Lys222*",
"transcript": "XM_047423528.1",
"protein_id": "XP_047279484.1",
"transcript_support_level": null,
"aa_start": 222,
"aa_end": null,
"aa_length": 230,
"cds_start": 664,
"cds_end": null,
"cds_length": 693,
"cdna_start": 1031,
"cdna_end": null,
"cdna_length": 1585,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.547A>T",
"hgvs_p": "p.Lys183*",
"transcript": "XM_047423530.1",
"protein_id": "XP_047279486.1",
"transcript_support_level": null,
"aa_start": 183,
"aa_end": null,
"aa_length": 191,
"cds_start": 547,
"cds_end": null,
"cds_length": 576,
"cdna_start": 665,
"cdna_end": null,
"cdna_length": 1219,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "n.215A>T",
"hgvs_p": null,
"transcript": "ENST00000473695.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 632,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000306114",
"gene_hgnc_id": null,
"hgvs_c": "n.150-3388T>A",
"hgvs_p": null,
"transcript": "ENST00000815380.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 462,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ENSG00000306114",
"gene_hgnc_id": null,
"hgvs_c": "n.167+575T>A",
"hgvs_p": null,
"transcript": "ENST00000815381.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 480,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"dbsnp": "rs387906757",
"frequency_reference_population": 0.000021111036,
"hom_count_reference_population": 0,
"allele_count_reference_population": 34,
"gnomad_exomes_af": 0.0000185148,
"gnomad_genomes_af": 0.0000459812,
"gnomad_exomes_ac": 27,
"gnomad_genomes_ac": 7,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.5600000023841858,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.56,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 6.934,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 4,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PVS1_Moderate,PM2",
"acmg_by_gene": [
{
"score": 4,
"benign_score": 0,
"pathogenic_score": 4,
"criteria": [
"PVS1_Moderate",
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001698.3",
"gene_symbol": "AUH",
"hgnc_id": 890,
"effects": [
"stop_gained"
],
"inheritance_mode": "AR",
"hgvs_c": "c.991A>T",
"hgvs_p": "p.Lys331*"
},
{
"score": 6,
"benign_score": 0,
"pathogenic_score": 6,
"criteria": [
"PM2",
"PP3_Strong"
],
"verdict": "Likely_pathogenic",
"transcript": "ENST00000815380.1",
"gene_symbol": "ENSG00000306114",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.150-3388T>A",
"hgvs_p": null
}
],
"clinvar_disease": "3-methylglutaconic aciduria type 1",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "3-methylglutaconic aciduria type 1",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}