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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-91297993-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=91297993&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 91297993,
"ref": "G",
"alt": "A",
"effect": "stop_gained",
"transcript": "ENST00000375731.9",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.589C>T",
"hgvs_p": "p.Arg197*",
"transcript": "NM_001698.3",
"protein_id": "NP_001689.1",
"transcript_support_level": null,
"aa_start": 197,
"aa_end": null,
"aa_length": 339,
"cds_start": 589,
"cds_end": null,
"cds_length": 1020,
"cdna_start": 618,
"cdna_end": null,
"cdna_length": 1574,
"mane_select": "ENST00000375731.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.589C>T",
"hgvs_p": "p.Arg197*",
"transcript": "ENST00000375731.9",
"protein_id": "ENSP00000364883.5",
"transcript_support_level": 1,
"aa_start": 197,
"aa_end": null,
"aa_length": 339,
"cds_start": 589,
"cds_end": null,
"cds_length": 1020,
"cdna_start": 618,
"cdna_end": null,
"cdna_length": 1574,
"mane_select": "NM_001698.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.502C>T",
"hgvs_p": "p.Arg168*",
"transcript": "ENST00000303617.5",
"protein_id": "ENSP00000307334.5",
"transcript_support_level": 1,
"aa_start": 168,
"aa_end": null,
"aa_length": 310,
"cds_start": 502,
"cds_end": null,
"cds_length": 933,
"cdna_start": 526,
"cdna_end": null,
"cdna_length": 1490,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.502C>T",
"hgvs_p": "p.Arg168*",
"transcript": "NM_001306190.2",
"protein_id": "NP_001293119.1",
"transcript_support_level": null,
"aa_start": 168,
"aa_end": null,
"aa_length": 310,
"cds_start": 502,
"cds_end": null,
"cds_length": 933,
"cdna_start": 531,
"cdna_end": null,
"cdna_length": 1487,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.262C>T",
"hgvs_p": "p.Arg88*",
"transcript": "NM_001351431.2",
"protein_id": "NP_001338360.1",
"transcript_support_level": null,
"aa_start": 88,
"aa_end": null,
"aa_length": 230,
"cds_start": 262,
"cds_end": null,
"cds_length": 693,
"cdna_start": 688,
"cdna_end": null,
"cdna_length": 1644,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.262C>T",
"hgvs_p": "p.Arg88*",
"transcript": "NM_001351432.2",
"protein_id": "NP_001338361.1",
"transcript_support_level": null,
"aa_start": 88,
"aa_end": null,
"aa_length": 230,
"cds_start": 262,
"cds_end": null,
"cds_length": 693,
"cdna_start": 780,
"cdna_end": null,
"cdna_length": 1736,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.262C>T",
"hgvs_p": "p.Arg88*",
"transcript": "NM_001351433.2",
"protein_id": "NP_001338362.1",
"transcript_support_level": null,
"aa_start": 88,
"aa_end": null,
"aa_length": 214,
"cds_start": 262,
"cds_end": null,
"cds_length": 645,
"cdna_start": 688,
"cdna_end": null,
"cdna_length": 1596,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.619C>T",
"hgvs_p": "p.Arg207*",
"transcript": "XM_005252066.4",
"protein_id": "XP_005252123.1",
"transcript_support_level": null,
"aa_start": 207,
"aa_end": null,
"aa_length": 349,
"cds_start": 619,
"cds_end": null,
"cds_length": 1050,
"cdna_start": 648,
"cdna_end": null,
"cdna_length": 1604,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.619C>T",
"hgvs_p": "p.Arg207*",
"transcript": "XM_005252067.5",
"protein_id": "XP_005252124.1",
"transcript_support_level": null,
"aa_start": 207,
"aa_end": null,
"aa_length": 333,
"cds_start": 619,
"cds_end": null,
"cds_length": 1002,
"cdna_start": 648,
"cdna_end": null,
"cdna_length": 1556,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.589C>T",
"hgvs_p": "p.Arg197*",
"transcript": "XM_017014849.2",
"protein_id": "XP_016870338.1",
"transcript_support_level": null,
"aa_start": 197,
"aa_end": null,
"aa_length": 323,
"cds_start": 589,
"cds_end": null,
"cds_length": 972,
"cdna_start": 618,
"cdna_end": null,
"cdna_length": 1526,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.532C>T",
"hgvs_p": "p.Arg178*",
"transcript": "XM_006717150.4",
"protein_id": "XP_006717213.1",
"transcript_support_level": null,
"aa_start": 178,
"aa_end": null,
"aa_length": 320,
"cds_start": 532,
"cds_end": null,
"cds_length": 963,
"cdna_start": 561,
"cdna_end": null,
"cdna_length": 1517,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.619C>T",
"hgvs_p": "p.Arg207*",
"transcript": "XM_005252069.5",
"protein_id": "XP_005252126.1",
"transcript_support_level": null,
"aa_start": 207,
"aa_end": null,
"aa_length": 298,
"cds_start": 619,
"cds_end": null,
"cds_length": 897,
"cdna_start": 648,
"cdna_end": null,
"cdna_length": 1500,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.502C>T",
"hgvs_p": "p.Arg168*",
"transcript": "XM_047423525.1",
"protein_id": "XP_047279481.1",
"transcript_support_level": null,
"aa_start": 168,
"aa_end": null,
"aa_length": 294,
"cds_start": 502,
"cds_end": null,
"cds_length": 885,
"cdna_start": 531,
"cdna_end": null,
"cdna_length": 1439,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.589C>T",
"hgvs_p": "p.Arg197*",
"transcript": "XM_047423526.1",
"protein_id": "XP_047279482.1",
"transcript_support_level": null,
"aa_start": 197,
"aa_end": null,
"aa_length": 288,
"cds_start": 589,
"cds_end": null,
"cds_length": 867,
"cdna_start": 618,
"cdna_end": null,
"cdna_length": 1470,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.619C>T",
"hgvs_p": "p.Arg207*",
"transcript": "XM_011518800.4",
"protein_id": "XP_011517102.1",
"transcript_support_level": null,
"aa_start": 207,
"aa_end": null,
"aa_length": 265,
"cds_start": 619,
"cds_end": null,
"cds_length": 798,
"cdna_start": 648,
"cdna_end": null,
"cdna_length": 8302,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.589C>T",
"hgvs_p": "p.Arg197*",
"transcript": "XM_005252072.3",
"protein_id": "XP_005252129.1",
"transcript_support_level": null,
"aa_start": 197,
"aa_end": null,
"aa_length": 255,
"cds_start": 589,
"cds_end": null,
"cds_length": 768,
"cdna_start": 618,
"cdna_end": null,
"cdna_length": 8272,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.265C>T",
"hgvs_p": "p.Arg89*",
"transcript": "XM_047423527.1",
"protein_id": "XP_047279483.1",
"transcript_support_level": null,
"aa_start": 89,
"aa_end": null,
"aa_length": 231,
"cds_start": 265,
"cds_end": null,
"cds_length": 696,
"cdna_start": 2295,
"cdna_end": null,
"cdna_length": 3251,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.262C>T",
"hgvs_p": "p.Arg88*",
"transcript": "XM_047423528.1",
"protein_id": "XP_047279484.1",
"transcript_support_level": null,
"aa_start": 88,
"aa_end": null,
"aa_length": 230,
"cds_start": 262,
"cds_end": null,
"cds_length": 693,
"cdna_start": 629,
"cdna_end": null,
"cdna_length": 1585,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.502C>T",
"hgvs_p": "p.Arg168*",
"transcript": "XM_047423529.1",
"protein_id": "XP_047279485.1",
"transcript_support_level": null,
"aa_start": 168,
"aa_end": null,
"aa_length": 226,
"cds_start": 502,
"cds_end": null,
"cds_length": 681,
"cdna_start": 531,
"cdna_end": null,
"cdna_length": 8185,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "c.145C>T",
"hgvs_p": "p.Arg49*",
"transcript": "XM_047423530.1",
"protein_id": "XP_047279486.1",
"transcript_support_level": null,
"aa_start": 49,
"aa_end": null,
"aa_length": 191,
"cds_start": 145,
"cds_end": null,
"cds_length": 576,
"cdna_start": 263,
"cdna_end": null,
"cdna_length": 1219,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "n.749C>T",
"hgvs_p": null,
"transcript": "ENST00000478465.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 751,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "n.648C>T",
"hgvs_p": null,
"transcript": "XR_007061323.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 928,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"hgvs_c": "n.618C>T",
"hgvs_p": null,
"transcript": "XR_007061324.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 898,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "AUH",
"gene_hgnc_id": 890,
"dbsnp": "rs121434636",
"frequency_reference_population": 0.00001246092,
"hom_count_reference_population": 0,
"allele_count_reference_population": 20,
"gnomad_exomes_af": 0.00000963636,
"gnomad_genomes_af": 0.0000394249,
"gnomad_exomes_ac": 14,
"gnomad_genomes_ac": 6,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.5099999904632568,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.51,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 0.619,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 18,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2,PP5_Very_Strong",
"acmg_by_gene": [
{
"score": 18,
"benign_score": 0,
"pathogenic_score": 18,
"criteria": [
"PVS1",
"PM2",
"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "ENST00000375731.9",
"gene_symbol": "AUH",
"hgnc_id": 890,
"effects": [
"stop_gained"
],
"inheritance_mode": "AR",
"hgvs_c": "c.589C>T",
"hgvs_p": "p.Arg197*"
}
],
"clinvar_disease": "3-methylglutaconic aciduria type 1,not provided",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:4",
"phenotype_combined": "3-methylglutaconic aciduria type 1|not provided",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}