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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 9-96336781-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=9&pos=96336781&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "9",
"pos": 96336781,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_007001.3",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.688A>G",
"hgvs_p": "p.Thr230Ala",
"transcript": "NM_007001.3",
"protein_id": "NP_008932.2",
"transcript_support_level": null,
"aa_start": 230,
"aa_end": null,
"aa_length": 337,
"cds_start": 688,
"cds_end": null,
"cds_length": 1014,
"cdna_start": 765,
"cdna_end": null,
"cdna_length": 1623,
"mane_select": "ENST00000253270.13",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_007001.3"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.688A>G",
"hgvs_p": "p.Thr230Ala",
"transcript": "ENST00000253270.13",
"protein_id": "ENSP00000253270.7",
"transcript_support_level": 1,
"aa_start": 230,
"aa_end": null,
"aa_length": 337,
"cds_start": 688,
"cds_end": null,
"cds_length": 1014,
"cdna_start": 765,
"cdna_end": null,
"cdna_length": 1623,
"mane_select": "NM_007001.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000253270.13"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.489-12612A>G",
"hgvs_p": null,
"transcript": "ENST00000375259.9",
"protein_id": "ENSP00000364408.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 249,
"cds_start": null,
"cds_end": null,
"cds_length": 750,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1337,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000375259.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285269",
"gene_hgnc_id": null,
"hgvs_c": "n.289A>G",
"hgvs_p": null,
"transcript": "ENST00000643789.1",
"protein_id": "ENSP00000494818.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3333,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000643789.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.811A>G",
"hgvs_p": "p.Thr271Ala",
"transcript": "ENST00000955257.1",
"protein_id": "ENSP00000625316.1",
"transcript_support_level": null,
"aa_start": 271,
"aa_end": null,
"aa_length": 378,
"cds_start": 811,
"cds_end": null,
"cds_length": 1137,
"cdna_start": 873,
"cdna_end": null,
"cdna_length": 1733,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000955257.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.796A>G",
"hgvs_p": "p.Thr266Ala",
"transcript": "ENST00000878040.1",
"protein_id": "ENSP00000548099.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 373,
"cds_start": 796,
"cds_end": null,
"cds_length": 1122,
"cdna_start": 834,
"cdna_end": null,
"cdna_length": 1695,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878040.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.763A>G",
"hgvs_p": "p.Thr255Ala",
"transcript": "ENST00000878036.1",
"protein_id": "ENSP00000548095.1",
"transcript_support_level": null,
"aa_start": 255,
"aa_end": null,
"aa_length": 362,
"cds_start": 763,
"cds_end": null,
"cds_length": 1089,
"cdna_start": 812,
"cdna_end": null,
"cdna_length": 3327,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878036.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.685A>G",
"hgvs_p": "p.Thr229Ala",
"transcript": "ENST00000923824.1",
"protein_id": "ENSP00000593883.1",
"transcript_support_level": null,
"aa_start": 229,
"aa_end": null,
"aa_length": 336,
"cds_start": 685,
"cds_end": null,
"cds_length": 1011,
"cdna_start": 762,
"cdna_end": null,
"cdna_length": 1621,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000923824.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.619A>G",
"hgvs_p": "p.Thr207Ala",
"transcript": "ENST00000955259.1",
"protein_id": "ENSP00000625318.1",
"transcript_support_level": null,
"aa_start": 207,
"aa_end": null,
"aa_length": 314,
"cds_start": 619,
"cds_end": null,
"cds_length": 945,
"cdna_start": 686,
"cdna_end": null,
"cdna_length": 1464,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000955259.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.616A>G",
"hgvs_p": "p.Thr206Ala",
"transcript": "ENST00000878042.1",
"protein_id": "ENSP00000548101.1",
"transcript_support_level": null,
"aa_start": 206,
"aa_end": null,
"aa_length": 313,
"cds_start": 616,
"cds_end": null,
"cds_length": 942,
"cdna_start": 654,
"cdna_end": null,
"cdna_length": 1431,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878042.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.547A>G",
"hgvs_p": "p.Thr183Ala",
"transcript": "ENST00000878039.1",
"protein_id": "ENSP00000548098.1",
"transcript_support_level": null,
"aa_start": 183,
"aa_end": null,
"aa_length": 290,
"cds_start": 547,
"cds_end": null,
"cds_length": 873,
"cdna_start": 596,
"cdna_end": null,
"cdna_length": 1457,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878039.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.517A>G",
"hgvs_p": "p.Thr173Ala",
"transcript": "ENST00000955255.1",
"protein_id": "ENSP00000625314.1",
"transcript_support_level": null,
"aa_start": 173,
"aa_end": null,
"aa_length": 280,
"cds_start": 517,
"cds_end": null,
"cds_length": 843,
"cdna_start": 579,
"cdna_end": null,
"cdna_length": 1475,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000955255.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.514A>G",
"hgvs_p": "p.Thr172Ala",
"transcript": "ENST00000955256.1",
"protein_id": "ENSP00000625315.1",
"transcript_support_level": null,
"aa_start": 172,
"aa_end": null,
"aa_length": 279,
"cds_start": 514,
"cds_end": null,
"cds_length": 840,
"cdna_start": 591,
"cdna_end": null,
"cdna_length": 1448,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000955256.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.448A>G",
"hgvs_p": "p.Thr150Ala",
"transcript": "ENST00000878041.1",
"protein_id": "ENSP00000548100.1",
"transcript_support_level": null,
"aa_start": 150,
"aa_end": null,
"aa_length": 257,
"cds_start": 448,
"cds_end": null,
"cds_length": 774,
"cdna_start": 453,
"cdna_end": null,
"cdna_length": 1310,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878041.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.424A>G",
"hgvs_p": "p.Thr142Ala",
"transcript": "ENST00000955258.1",
"protein_id": "ENSP00000625317.1",
"transcript_support_level": null,
"aa_start": 142,
"aa_end": null,
"aa_length": 249,
"cds_start": 424,
"cds_end": null,
"cds_length": 750,
"cdna_start": 461,
"cdna_end": null,
"cdna_length": 1319,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000955258.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.376A>G",
"hgvs_p": "p.Thr126Ala",
"transcript": "ENST00000923823.1",
"protein_id": "ENSP00000593882.1",
"transcript_support_level": null,
"aa_start": 126,
"aa_end": null,
"aa_length": 233,
"cds_start": 376,
"cds_end": null,
"cds_length": 702,
"cdna_start": 453,
"cdna_end": null,
"cdna_length": 1315,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000923823.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.283A>G",
"hgvs_p": "p.Thr95Ala",
"transcript": "ENST00000923825.1",
"protein_id": "ENSP00000593884.1",
"transcript_support_level": null,
"aa_start": 95,
"aa_end": null,
"aa_length": 202,
"cds_start": 283,
"cds_end": null,
"cds_length": 609,
"cdna_start": 360,
"cdna_end": null,
"cdna_length": 1146,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000923825.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.379A>G",
"hgvs_p": "p.Thr127Ala",
"transcript": "ENST00000490599.2",
"protein_id": "ENSP00000498151.1",
"transcript_support_level": 2,
"aa_start": 127,
"aa_end": null,
"aa_length": 192,
"cds_start": 379,
"cds_end": null,
"cds_length": 579,
"cdna_start": 380,
"cdna_end": null,
"cdna_length": 867,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000490599.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.807+7123A>G",
"hgvs_p": null,
"transcript": "ENST00000878038.1",
"protein_id": "ENSP00000548097.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 329,
"cds_start": null,
"cds_end": null,
"cds_length": 990,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1579,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878038.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.489-12612A>G",
"hgvs_p": null,
"transcript": "NM_001286990.2",
"protein_id": "NP_001273919.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 249,
"cds_start": null,
"cds_end": null,
"cds_length": 750,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1359,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001286990.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "c.348-12612A>G",
"hgvs_p": null,
"transcript": "ENST00000878037.1",
"protein_id": "ENSP00000548096.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 202,
"cds_start": null,
"cds_end": null,
"cds_length": 609,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1228,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878037.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "n.*465A>G",
"hgvs_p": null,
"transcript": "ENST00000650065.1",
"protein_id": "ENSP00000497899.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2679,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000650065.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
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"gene_symbol": "SLC35D2",
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"hgvs_c": "n.765A>G",
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"transcript": "NR_104627.2",
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"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2791,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_104627.2"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2-HSD17B3",
"gene_hgnc_id": null,
"hgvs_c": "n.765A>G",
"hgvs_p": null,
"transcript": "NR_182427.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3854,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_182427.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"hgvs_c": "n.*465A>G",
"hgvs_p": null,
"transcript": "ENST00000650065.1",
"protein_id": "ENSP00000497899.1",
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"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2679,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000650065.1"
}
],
"gene_symbol": "SLC35D2",
"gene_hgnc_id": 20799,
"dbsnp": "rs150233547",
"frequency_reference_population": 0.000054005886,
"hom_count_reference_population": 0,
"allele_count_reference_population": 84,
"gnomad_exomes_af": 0.0000313596,
"gnomad_genomes_af": 0.000262629,
"gnomad_exomes_ac": 44,
"gnomad_genomes_ac": 40,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.044172823429107666,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.054,
"revel_prediction": "Benign",
"alphamissense_score": 0.0656,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": -0.51,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.66,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Strong",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_007001.3",
"gene_symbol": "SLC35D2",
"hgnc_id": 20799,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.688A>G",
"hgvs_p": "p.Thr230Ala"
},
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000643789.1",
"gene_symbol": "ENSG00000285269",
"hgnc_id": null,
"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.289A>G",
"hgvs_p": null
},
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NR_182427.1",
"gene_symbol": "SLC35D2-HSD17B3",
"hgnc_id": null,
"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.765A>G",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}