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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: X-103500460-GC-AT (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=X&pos=103500460&ref=GC&alt=AT&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "RAB40A",
          "hgnc_id": 18283,
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "NM_080879.3",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgnc_id": null,
          "hgvs_c": "n.1953_1954delGCinsAT",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "ENST00000445990.2",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "",
      "acmg_score": 0,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "AT",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "X",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1969,
          "cdna_start": 639,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_080879.3",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000304236.2",
          "protein_coding": true,
          "protein_id": "NP_543155.2",
          "strand": false,
          "transcript": "NM_080879.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1969,
          "cdna_start": 639,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000304236.2",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_080879.3",
          "protein_coding": true,
          "protein_id": "ENSP00000305648.1",
          "strand": false,
          "transcript": "ENST00000304236.2",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3126,
          "cdna_start": 2416,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 1,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000372633.1",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000361716.1",
          "strand": false,
          "transcript": "ENST00000372633.1",
          "transcript_support_level": 6
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1483,
          "cdna_start": 774,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000905301.1",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000575360.1",
          "strand": false,
          "transcript": "ENST00000905301.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4454,
          "cdna_start": 535,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000905302.1",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000575361.1",
          "strand": false,
          "transcript": "ENST00000905302.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2195,
          "cdna_start": 530,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000942559.1",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000612618.1",
          "strand": false,
          "transcript": "ENST00000942559.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1241,
          "cdna_start": 531,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000942560.1",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000612619.1",
          "strand": false,
          "transcript": "ENST00000942560.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7688,
          "cdna_start": 494,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_047441843.1",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047297799.1",
          "strand": false,
          "transcript": "XM_047441843.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "R",
          "aa_start": 99,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1821,
          "cdna_start": 491,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 296,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_047441844.1",
          "gene_hgnc_id": 18283,
          "gene_symbol": "RAB40A",
          "hgvs_c": "c.296_297delGCinsAT",
          "hgvs_p": "p.Arg99His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047297800.1",
          "strand": false,
          "transcript": "XM_047441844.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2803,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000445990.2",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.1953_1954delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000445990.2",
          "transcript_support_level": 3
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2428,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000801275.1",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.1988_1989delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000801275.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2390,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000801276.1",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.1949_1950delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000801276.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2332,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000801277.1",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.1892_1893delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000801277.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1848,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 7,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000801278.1",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.1408_1409delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000801278.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2572,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "NR_188433.1",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.2130_2131delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "NR_188433.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2499,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "NR_188435.1",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.2057_2058delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "NR_188435.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2296,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "NR_188436.1",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.1854_1855delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "NR_188436.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2375,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "NR_188437.1",
          "gene_hgnc_id": null,
          "gene_symbol": "LL0XNC01-250H12.3",
          "hgvs_c": "n.1933_1934delGCinsAT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "NR_188437.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2223,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.