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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: X-135985823-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=X&pos=135985823&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM1",
"PM2",
"PP3"
],
"effects": [
"missense_variant"
],
"gene_symbol": "SLC9A6",
"hgnc_id": 11079,
"hgvs_c": "c.321T>G",
"hgvs_p": "p.Ile107Met",
"inheritance_mode": "XL",
"pathogenic_score": 5,
"score": 5,
"transcript": "NM_001438742.1",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM1,PM2,PP3",
"acmg_score": 5,
"allele_count_reference_population": 0,
"alphamissense_prediction": null,
"alphamissense_score": 0.257,
"alt": "G",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.59,
"chr": "X",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.3108575940132141,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 679,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4684,
"cdna_start": 264,
"cds_end": null,
"cds_length": 2040,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 18,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001379110.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000630721.3",
"protein_coding": true,
"protein_id": "NP_001366039.1",
"strand": true,
"transcript": "NM_001379110.1",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 679,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 4684,
"cdna_start": 264,
"cds_end": null,
"cds_length": 2040,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 18,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000630721.3",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001379110.1",
"protein_coding": true,
"protein_id": "ENSP00000487486.2",
"strand": true,
"transcript": "ENST00000630721.3",
"transcript_support_level": 4
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 701,
"aa_ref": "I",
"aa_start": 107,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 4711,
"cdna_start": 389,
"cds_end": null,
"cds_length": 2106,
"cds_start": 321,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000370695.8",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.321T>G",
"hgvs_p": "p.Ile107Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000359729.4",
"strand": true,
"transcript": "ENST00000370695.8",
"transcript_support_level": 1
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 669,
"aa_ref": "I",
"aa_start": 107,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 4631,
"cdna_start": 397,
"cds_end": null,
"cds_length": 2010,
"cds_start": 321,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000370698.7",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.321T>G",
"hgvs_p": "p.Ile107Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000359732.3",
"strand": true,
"transcript": "ENST00000370698.7",
"transcript_support_level": 1
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 4755,
"cdna_start": 564,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000370701.6",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000359735.1",
"strand": true,
"transcript": "ENST00000370701.6",
"transcript_support_level": 1
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 731,
"aa_ref": "I",
"aa_start": 107,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4809,
"cdna_start": 389,
"cds_end": null,
"cds_length": 2196,
"cds_start": 321,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "NM_001438742.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.321T>G",
"hgvs_p": "p.Ile107Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425671.1",
"strand": true,
"transcript": "NM_001438742.1",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 731,
"aa_ref": "I",
"aa_start": 107,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4809,
"cdna_start": 389,
"cds_end": null,
"cds_length": 2196,
"cds_start": 321,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000678163.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.321T>G",
"hgvs_p": "p.Ile107Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000502845.1",
"strand": true,
"transcript": "ENST00000678163.1",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 701,
"aa_ref": "I",
"aa_start": 107,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4719,
"cdna_start": 389,
"cds_end": null,
"cds_length": 2106,
"cds_start": 321,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "NM_001042537.2",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.321T>G",
"hgvs_p": "p.Ile107Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001036002.1",
"strand": true,
"transcript": "NM_001042537.2",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 669,
"aa_ref": "I",
"aa_start": 107,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4623,
"cdna_start": 389,
"cds_end": null,
"cds_length": 2010,
"cds_start": 321,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "NM_006359.3",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.321T>G",
"hgvs_p": "p.Ile107Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_006350.1",
"strand": true,
"transcript": "NM_006359.3",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4594,
"cdna_start": 264,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001177651.2",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001171122.1",
"strand": true,
"transcript": "NM_001177651.2",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4873,
"cdna_start": 543,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 18,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "NM_001400909.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001387838.1",
"strand": true,
"transcript": "NM_001400909.1",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4739,
"cdna_start": 409,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001400910.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001387839.1",
"strand": true,
"transcript": "NM_001400910.1",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4621,
"cdna_start": 291,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001400911.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001387840.1",
"strand": true,
"transcript": "NM_001400911.1",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4589,
"cdna_start": 259,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001400912.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001387841.1",
"strand": true,
"transcript": "NM_001400912.1",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4697,
"cdna_start": 369,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000636092.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000490406.1",
"strand": true,
"transcript": "ENST00000636092.1",
"transcript_support_level": 5
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4867,
"cdna_start": 539,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 18,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000636347.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000490648.1",
"strand": true,
"transcript": "ENST00000636347.1",
"transcript_support_level": 5
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4691,
"cdna_start": 363,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 19,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000637234.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000490527.1",
"strand": true,
"transcript": "ENST00000637234.1",
"transcript_support_level": 5
},
{
"aa_alt": "M",
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"aa_length": 649,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4872,
"cdna_start": 544,
"cds_end": null,
"cds_length": 1950,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000637581.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000490731.1",
"strand": true,
"transcript": "ENST00000637581.1",
"transcript_support_level": 5
},
{
"aa_alt": "M",
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"aa_length": 617,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4493,
"cdna_start": 259,
"cds_end": null,
"cds_length": 1854,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001330652.2",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001317581.1",
"strand": true,
"transcript": "NM_001330652.2",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 617,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4498,
"cdna_start": 264,
"cds_end": null,
"cds_length": 1854,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001400913.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001387842.1",
"strand": true,
"transcript": "NM_001400913.1",
"transcript_support_level": null
},
{
"aa_alt": "M",
"aa_end": null,
"aa_length": 617,
"aa_ref": "I",
"aa_start": 55,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4858,
"cdna_start": 646,
"cds_end": null,
"cds_length": 1854,
"cds_start": 165,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000637195.1",
"gene_hgnc_id": 11079,
"gene_symbol": "SLC9A6",
"hgvs_c": "c.165T>G",
"hgvs_p": "p.Ile55Met",
"intron_rank": null,
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}