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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: X-15331876-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=X&pos=15331876&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "X",
      "pos": 15331876,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "ENST00000333590.6",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.55C>T",
          "hgvs_p": "p.Arg19Trp",
          "transcript": "NM_002641.4",
          "protein_id": "NP_002632.1",
          "transcript_support_level": null,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 484,
          "cds_start": 55,
          "cds_end": null,
          "cds_length": 1455,
          "cdna_start": 140,
          "cdna_end": null,
          "cdna_length": 3590,
          "mane_select": "ENST00000333590.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.55C>T",
          "hgvs_p": "p.Arg19Trp",
          "transcript": "ENST00000333590.6",
          "protein_id": "ENSP00000369820.3",
          "transcript_support_level": 1,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 484,
          "cds_start": 55,
          "cds_end": null,
          "cds_length": 1455,
          "cdna_start": 140,
          "cdna_end": null,
          "cdna_length": 3590,
          "mane_select": "NM_002641.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.-317C>T",
          "hgvs_p": null,
          "transcript": "ENST00000637296.1",
          "protein_id": "ENSP00000490545.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 169,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 510,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2113,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.-233C>T",
          "hgvs_p": null,
          "transcript": "ENST00000634640.1",
          "protein_id": "ENSP00000489083.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 149,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 451,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 854,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.55C>T",
          "hgvs_p": "p.Arg19Trp",
          "transcript": "NM_001440789.1",
          "protein_id": "NP_001427718.1",
          "transcript_support_level": null,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 515,
          "cds_start": 55,
          "cds_end": null,
          "cds_length": 1548,
          "cdna_start": 140,
          "cdna_end": null,
          "cdna_length": 3683,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.55C>T",
          "hgvs_p": "p.Arg19Trp",
          "transcript": "ENST00000542278.6",
          "protein_id": "ENSP00000442653.2",
          "transcript_support_level": 5,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 484,
          "cds_start": 55,
          "cds_end": null,
          "cds_length": 1455,
          "cdna_start": 175,
          "cdna_end": null,
          "cdna_length": 3626,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.55C>T",
          "hgvs_p": "p.Arg19Trp",
          "transcript": "ENST00000482148.6",
          "protein_id": "ENSP00000489528.1",
          "transcript_support_level": 5,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 315,
          "cds_start": 55,
          "cds_end": null,
          "cds_length": 948,
          "cdna_start": 120,
          "cdna_end": null,
          "cdna_length": 1092,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "W",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.55C>T",
          "hgvs_p": "p.Arg19Trp",
          "transcript": "ENST00000635543.1",
          "protein_id": "ENSP00000489205.1",
          "transcript_support_level": 4,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 151,
          "cds_start": 55,
          "cds_end": null,
          "cds_length": 457,
          "cdna_start": 170,
          "cdna_end": null,
          "cdna_length": 572,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.-317C>T",
          "hgvs_p": null,
          "transcript": "ENST00000637296.1",
          "protein_id": "ENSP00000490545.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 169,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 510,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2113,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.-233C>T",
          "hgvs_p": null,
          "transcript": "ENST00000634640.1",
          "protein_id": "ENSP00000489083.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 149,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 451,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 854,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "splice_region_variant",
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.140C>T",
          "hgvs_p": null,
          "transcript": "ENST00000474662.2",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 582,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.140C>T",
          "hgvs_p": null,
          "transcript": "ENST00000635045.1",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3738,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.55C>T",
          "hgvs_p": null,
          "transcript": "ENST00000635598.1",
          "protein_id": "ENSP00000489207.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 3246,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.55C>T",
          "hgvs_p": null,
          "transcript": "ENST00000637626.1",
          "protein_id": "ENSP00000489928.1",
          "transcript_support_level": 5,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 3877,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
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          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.55C>T",
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          "transcript": "ENST00000638131.1",
          "protein_id": "ENSP00000490483.1",
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          "cdna_length": 2963,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.171C>T",
          "hgvs_p": null,
          "transcript": "NR_033835.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 3252,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "splice_region_variant",
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.171C>T",
          "hgvs_p": null,
          "transcript": "NR_033836.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "cdna_start": null,
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          "cdna_length": 2968,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.140C>T",
          "hgvs_p": null,
          "transcript": "NR_199789.1",
          "protein_id": null,
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          "cdna_length": 3309,
          "mane_select": null,
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          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "splice_region_variant",
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.140C>T",
          "hgvs_p": null,
          "transcript": "NR_199790.1",
          "protein_id": null,
          "transcript_support_level": null,
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          "cdna_start": null,
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          "cdna_length": 3025,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.-317C>T",
          "hgvs_p": null,
          "transcript": "ENST00000637296.1",
          "protein_id": "ENSP00000490545.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 169,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 510,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2113,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.-233C>T",
          "hgvs_p": null,
          "transcript": "ENST00000634640.1",
          "protein_id": "ENSP00000489083.1",
          "transcript_support_level": 5,
          "aa_start": null,
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          "aa_length": 149,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 451,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 854,
          "mane_select": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.14-3563C>T",
          "hgvs_p": null,
          "transcript": "NM_001440790.1",
          "protein_id": "NP_001427719.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 281,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 846,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2906,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.13+3625C>T",
          "hgvs_p": null,
          "transcript": "NM_020473.3",
          "protein_id": "NP_065206.3",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 250,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 753,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2849,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "c.13+3625C>T",
          "hgvs_p": null,
          "transcript": "ENST00000634582.1",
          "protein_id": "ENSP00000489540.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 250,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 753,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 965,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PIGA",
          "gene_hgnc_id": 8957,
          "hgvs_c": "n.-153C>T",
          "hgvs_p": null,
          "transcript": "ENST00000634286.1",
          "protein_id": "ENSP00000489491.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 680,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "PIGA",
      "gene_hgnc_id": 8957,
      "dbsnp": "rs34422225",
      "frequency_reference_population": 0.03459899,
      "hom_count_reference_population": 14162,
      "allele_count_reference_population": 41828,
      "gnomad_exomes_af": 0.0349948,
      "gnomad_genomes_af": 0.030716,
      "gnomad_exomes_ac": 38393,
      "gnomad_genomes_ac": 3435,
      "gnomad_exomes_homalt": 535,
      "gnomad_genomes_homalt": 45,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.0021357834339141846,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.059,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1071,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.92,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.421,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -18,
      "acmg_classification": "Benign",
      "acmg_criteria": "PM5,BP4_Strong,BP6_Very_Strong,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -18,
          "benign_score": 20,
          "pathogenic_score": 2,
          "criteria": [
            "PM5",
            "BP4_Strong",
            "BP6_Very_Strong",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000333590.6",
          "gene_symbol": "PIGA",
          "hgnc_id": 8957,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "Unknown,XL,AD",
          "hgvs_c": "c.55C>T",
          "hgvs_p": "p.Arg19Trp"
        }
      ],
      "clinvar_disease": "Inborn genetic diseases,Multiple congenital anomalies-hypotonia-seizures syndrome 2,not provided,not specified",
      "clinvar_classification": "Benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "B:5",
      "phenotype_combined": "not specified|Multiple congenital anomalies-hypotonia-seizures syndrome 2|not provided|Inborn genetic diseases",
      "pathogenicity_classification_combined": "Benign",
      "custom_annotations": null
    }
  ],
  "message": null
}