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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: X-40680065-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=X&pos=40680065&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "MED14",
"hgnc_id": 2370,
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"inheritance_mode": "",
"pathogenic_score": 2,
"score": 2,
"transcript": "NM_004229.4",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_score": 2,
"allele_count_reference_population": 0,
"alphamissense_prediction": "Pathogenic",
"alphamissense_score": 0.7676,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.16,
"chr": "X",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Uncertain_significance",
"computational_score_selected": 0.4677567183971405,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1454,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7996,
"cdna_start": 2809,
"cds_end": null,
"cds_length": 4365,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 31,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "NM_004229.4",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000324817.6",
"protein_coding": true,
"protein_id": "NP_004220.2",
"strand": false,
"transcript": "NM_004229.4",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1454,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 7996,
"cdna_start": 2809,
"cds_end": null,
"cds_length": 4365,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 31,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000324817.6",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_004229.4",
"protein_coding": true,
"protein_id": "ENSP00000323720.1",
"strand": false,
"transcript": "ENST00000324817.6",
"transcript_support_level": 1
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1514,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6772,
"cdna_start": 2806,
"cds_end": null,
"cds_length": 4545,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 33,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000918215.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000588274.1",
"strand": false,
"transcript": "ENST00000918215.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1485,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7024,
"cdna_start": 3144,
"cds_end": null,
"cds_length": 4458,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 32,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000883181.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553240.1",
"strand": false,
"transcript": "ENST00000883181.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1428,
"aa_ref": "L",
"aa_start": 867,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4956,
"cdna_start": 2734,
"cds_end": null,
"cds_length": 4287,
"cds_start": 2601,
"consequences": [
"missense_variant"
],
"exon_count": 31,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000918216.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2601G>T",
"hgvs_p": "p.Leu867Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000588275.1",
"strand": false,
"transcript": "ENST00000918216.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1426,
"aa_ref": "L",
"aa_start": 865,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4917,
"cdna_start": 2695,
"cds_end": null,
"cds_length": 4281,
"cds_start": 2595,
"consequences": [
"missense_variant"
],
"exon_count": 31,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000883184.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2595G>T",
"hgvs_p": "p.Leu865Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553243.1",
"strand": false,
"transcript": "ENST00000883184.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1416,
"aa_ref": "L",
"aa_start": 899,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4808,
"cdna_start": 2825,
"cds_end": null,
"cds_length": 4251,
"cds_start": 2697,
"consequences": [
"missense_variant"
],
"exon_count": 30,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000918217.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2697G>T",
"hgvs_p": "p.Leu899Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000588276.1",
"strand": false,
"transcript": "ENST00000918217.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1410,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5226,
"cdna_start": 3136,
"cds_end": null,
"cds_length": 4233,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 30,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000883182.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553241.1",
"strand": false,
"transcript": "ENST00000883182.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1358,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4726,
"cdna_start": 2807,
"cds_end": null,
"cds_length": 4077,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 29,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000883183.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553242.1",
"strand": false,
"transcript": "ENST00000883183.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1488,
"aa_ref": "L",
"aa_start": 927,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 8089,
"cdna_start": 2902,
"cds_end": null,
"cds_length": 4467,
"cds_start": 2781,
"consequences": [
"missense_variant"
],
"exon_count": 31,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "XM_047442636.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2781G>T",
"hgvs_p": "p.Leu927Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047298592.1",
"strand": false,
"transcript": "XM_047442636.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1477,
"aa_ref": "L",
"aa_start": 927,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4587,
"cdna_start": 2845,
"cds_end": null,
"cds_length": 4434,
"cds_start": 2781,
"consequences": [
"missense_variant"
],
"exon_count": 31,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "XM_047442637.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2781G>T",
"hgvs_p": "p.Leu927Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047298593.1",
"strand": false,
"transcript": "XM_047442637.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1444,
"aa_ref": "L",
"aa_start": 927,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7950,
"cdna_start": 2895,
"cds_end": null,
"cds_length": 4335,
"cds_start": 2781,
"consequences": [
"missense_variant"
],
"exon_count": 30,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "XM_047442638.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2781G>T",
"hgvs_p": "p.Leu927Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047298594.1",
"strand": false,
"transcript": "XM_047442638.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1443,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4551,
"cdna_start": 2809,
"cds_end": null,
"cds_length": 4332,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 31,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "XM_047442639.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047298595.1",
"strand": false,
"transcript": "XM_047442639.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1433,
"aa_ref": "L",
"aa_start": 927,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4456,
"cdna_start": 2846,
"cds_end": null,
"cds_length": 4302,
"cds_start": 2781,
"consequences": [
"missense_variant"
],
"exon_count": 30,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "XM_047442640.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2781G>T",
"hgvs_p": "p.Leu927Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047298596.1",
"strand": false,
"transcript": "XM_047442640.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1410,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7864,
"cdna_start": 2809,
"cds_end": null,
"cds_length": 4233,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 30,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "XM_047442641.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047298597.1",
"strand": false,
"transcript": "XM_047442641.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1399,
"aa_ref": "L",
"aa_start": 893,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4419,
"cdna_start": 2809,
"cds_end": null,
"cds_length": 4200,
"cds_start": 2679,
"consequences": [
"missense_variant"
],
"exon_count": 30,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "XM_047442642.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2679G>T",
"hgvs_p": "p.Leu893Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047298598.1",
"strand": false,
"transcript": "XM_047442642.1",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 1338,
"aa_ref": "L",
"aa_start": 777,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7781,
"cdna_start": 2594,
"cds_end": null,
"cds_length": 4017,
"cds_start": 2331,
"consequences": [
"missense_variant"
],
"exon_count": 32,
"exon_rank": 22,
"exon_rank_end": null,
"feature": "XM_047442643.1",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "c.2331G>T",
"hgvs_p": "p.Leu777Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047298599.1",
"strand": false,
"transcript": "XM_047442643.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "pseudogene",
"canonical": false,
"cdna_end": null,
"cdna_length": 615,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 5,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000496531.2",
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"hgvs_c": "n.474+693G>T",
"hgvs_p": null,
"intron_rank": 4,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000496531.2",
"transcript_support_level": 5
}
],
"custom_annotations": null,
"dbscsnv_ada_prediction": null,
"dbscsnv_ada_score": null,
"dbsnp": null,
"effect": "missense_variant",
"frequency_reference_population": null,
"gene_hgnc_id": 2370,
"gene_symbol": "MED14",
"gnomad_exomes_ac": null,
"gnomad_exomes_af": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_ac": null,
"gnomad_genomes_af": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_heteroplasmic": null,
"gnomad_mito_homoplasmic": null,
"hom_count_reference_population": 0,
"mitotip_prediction": null,
"mitotip_score": null,
"pathogenicity_classification_combined": "Uncertain significance",
"phenotype_combined": "not specified",
"phylop100way_prediction": "Benign",
"phylop100way_score": 0.629,
"pos": 40680065,
"ref": "C",
"revel_prediction": "Benign",
"revel_score": 0.194,
"splice_prediction_selected": "Benign",
"splice_score_selected": 0.009999999776482582,
"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
"spliceai_max_score": 0.01,
"transcript": "NM_004229.4"
}
]
}