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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: X-71249332-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=X&pos=71249332&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "X",
"pos": 71249332,
"ref": "G",
"alt": "C",
"effect": "3_prime_UTR_variant",
"transcript": "NM_001171163.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.*111C>G",
"hgvs_p": null,
"transcript": "ENST00000373981.5",
"protein_id": "ENSP00000363093.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 495,
"cds_start": null,
"cds_end": null,
"cds_length": 1488,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000373981.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "NM_201599.3",
"protein_id": "NP_963893.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1370,
"cds_start": null,
"cds_end": null,
"cds_length": 4113,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000314425.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_201599.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000314425.9",
"protein_id": "ENSP00000322845.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1370,
"cds_start": null,
"cds_end": null,
"cds_length": 4113,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_201599.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000314425.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000373998.5",
"protein_id": "ENSP00000363110.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1358,
"cds_start": null,
"cds_end": null,
"cds_length": 4077,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000373998.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.*111C>G",
"hgvs_p": null,
"transcript": "ENST00000373982.5",
"protein_id": "ENSP00000363094.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 497,
"cds_start": null,
"cds_end": null,
"cds_length": 1494,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000373982.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.*111C>G",
"hgvs_p": null,
"transcript": "NM_001171163.1",
"protein_id": "NP_001164634.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 495,
"cds_start": null,
"cds_end": null,
"cds_length": 1488,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001171163.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.*260C>G",
"hgvs_p": null,
"transcript": "ENST00000373978.1",
"protein_id": "ENSP00000363090.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 349,
"cds_start": null,
"cds_end": null,
"cds_length": 1050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000373978.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1476+129C>G",
"hgvs_p": null,
"transcript": "ENST00000373988.5",
"protein_id": "ENSP00000363100.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1372,
"cds_start": null,
"cds_end": null,
"cds_length": 4119,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000373988.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "NM_005096.3",
"protein_id": "NP_005087.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1370,
"cds_start": null,
"cds_end": null,
"cds_length": 4113,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005096.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000851900.1",
"protein_id": "ENSP00000521959.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1370,
"cds_start": null,
"cds_end": null,
"cds_length": 4113,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851900.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000851902.1",
"protein_id": "ENSP00000521961.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1370,
"cds_start": null,
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"cds_length": 4113,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851902.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000851906.1",
"protein_id": "ENSP00000521965.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1370,
"cds_start": null,
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"cds_length": 4113,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851906.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000936826.1",
"protein_id": "ENSP00000606885.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1370,
"cds_start": null,
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"cds_length": 4113,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000936826.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 7,
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"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
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"transcript": "ENST00000936827.1",
"protein_id": "ENSP00000606886.1",
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"biotype": "protein_coding",
"feature": "ENST00000936827.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000936830.1",
"protein_id": "ENSP00000606889.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1370,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000936830.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000851905.1",
"protein_id": "ENSP00000521964.1",
"transcript_support_level": null,
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"cds_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851905.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1446+129C>G",
"hgvs_p": null,
"transcript": "ENST00000936829.1",
"protein_id": "ENSP00000606888.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1362,
"cds_start": null,
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"cds_length": 4089,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000936829.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "NM_001171162.1",
"protein_id": "NP_001164633.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1358,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001171162.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000851901.1",
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"feature": "ENST00000851901.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000851903.1",
"protein_id": "ENSP00000521962.1",
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"feature": "ENST00000851903.1"
},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000851904.1",
"protein_id": "ENSP00000521963.1",
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"aa_start": null,
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"aa_length": 1358,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851904.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ZMYM3",
"gene_hgnc_id": 13054,
"hgvs_c": "c.1470+129C>G",
"hgvs_p": null,
"transcript": "ENST00000936828.1",
"protein_id": "ENSP00000606887.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1285,
"cds_start": null,
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"cds_length": 3858,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000936828.1"
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
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}