AADACL2

arylacetamide deacetylase like 2, the group of Arylacetamide deacetylase family

Basic information

Region (hg38): 3:151733916-151761339

Links

ENSG00000197953 ∙ NCBI:344752 ∙ ∙ HGNC:24427 ∙ Uniprot:Q6P093 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the AADACL2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the AADACL2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			18	1		19
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	18	1	0

Variants in AADACL2

This is a list of pathogenic ClinVar variants found in the AADACL2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-151734099-C-T		not specified	Uncertain significance (Dec 14, 2023)
3-151740656-T-C		not specified	Uncertain significance (Jun 22, 2021)
3-151740746-C-T		not specified	Uncertain significance (Dec 06, 2021)
3-151740821-G-A		not specified	Uncertain significance (Mar 24, 2023)
3-151740853-T-C		not specified	Uncertain significance (Aug 02, 2023)
3-151740857-T-A		not specified	Uncertain significance (Feb 27, 2023)
3-151745519-G-A		not specified	Uncertain significance (May 20, 2024)
3-151745567-G-A		not specified	Uncertain significance (Dec 26, 2023)
3-151745604-A-G		not specified	Uncertain significance (Feb 28, 2024)
3-151745659-A-T		not specified	Uncertain significance (Nov 13, 2023)
3-151757011-T-G		not specified	Uncertain significance (May 22, 2023)
3-151757113-C-T		not specified	Uncertain significance (Aug 16, 2022)
3-151757193-C-T		not specified	Uncertain significance (Jun 06, 2023)
3-151757251-C-T		not specified	Uncertain significance (Jan 04, 2024)
3-151757275-T-C		not specified	Uncertain significance (Jan 02, 2024)
3-151757314-T-C		not specified	Uncertain significance (Oct 04, 2022)
3-151757353-C-T		not specified	Uncertain significance (Mar 18, 2024)
3-151757489-G-C		not specified	Uncertain significance (Dec 28, 2023)
3-151757506-C-T		not specified	Uncertain significance (Jun 03, 2022)
3-151757515-T-C		not specified	Uncertain significance (Dec 09, 2023)
3-151757539-G-A		not specified	Likely benign (Mar 11, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
AADACL2	protein_coding	protein_coding	ENST00000356517	5	27424

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.06e-8	0.0988	125706	0	17	125723	0.0000676

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.209	206	215	0.960	0.0000105	2619
Missense in Polyphen		58	65.057	0.89153		878
Synonymous	-0.225	79	76.5	1.03	0.00000387	772
Loss of Function	-0.121	12	11.6	1.04	8.42e-7	115

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000182	0.000181
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.000106	0.000106
Middle Eastern	0.00	0.00
South Asian	0.0000328	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.116

Intolerance Scores

• loftool: 0.878
• rvis_EVS: -0.31
• rvis_percentile_EVS: 31.93

Haploinsufficiency Scores

• pHI: 0.0638
• hipred: N
• hipred_score: 0.248
• ghis: 0.572

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.187

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Aadacl2

Gene ontology

• Cellular component: extracellular region;integral component of membrane
• Molecular function: carboxylic ester hydrolase activity