AADACL3

arylacetamide deacetylase like 3, the group of Arylacetamide deacetylase family

Basic information

Region (hg38): 1:12716110-12728760

Links

ENSG00000188984 ∙ NCBI:126767 ∙ ∙ HGNC:32037 ∙ Uniprot:Q5VUY0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the AADACL3 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the AADACL3 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			17			17
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	17	1	0

Variants in AADACL3

This is a list of pathogenic ClinVar variants found in the AADACL3 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-12719562-G-A		not specified	Uncertain significance (Dec 18, 2023)
1-12719575-C-T		not specified	Uncertain significance (Dec 18, 2023)
1-12719664-G-A		not specified	Uncertain significance (Jan 26, 2022)
1-12719670-G-C		not specified	Uncertain significance (Mar 22, 2023)
1-12719679-A-G		not specified	Uncertain significance (Mar 16, 2022)
1-12725226-C-T		not specified	Uncertain significance (Jul 09, 2021)
1-12725355-G-A		not specified	Uncertain significance (Mar 21, 2023)
1-12725355-G-C		not specified	Uncertain significance (Aug 28, 2023)
1-12725365-T-G		not specified	Uncertain significance (Dec 19, 2022)
1-12725374-T-C		not specified	Uncertain significance (Jul 09, 2021)
1-12725412-C-T		not specified	Uncertain significance (Nov 30, 2022)
1-12725418-C-T		not specified	Uncertain significance (Mar 12, 2024)
1-12725424-C-G		not specified	Uncertain significance (Nov 20, 2023)
1-12725526-T-G		not specified	Uncertain significance (Dec 20, 2023)
1-12725783-G-A			Likely benign (Nov 01, 2022)
1-12725796-G-A		not specified	Uncertain significance (May 26, 2024)
1-12725821-G-A		not specified	Uncertain significance (Jul 19, 2023)
1-12725830-C-T		not specified	Uncertain significance (Dec 17, 2023)
1-12725944-C-T		not specified	Uncertain significance (Jun 18, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
AADACL3	protein_coding	protein_coding	ENST00000359318	3	12609

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0119	0.658	124775	0	21	124796	0.0000841

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.344	212	198	1.07	0.0000109	2299
Missense in Polyphen		82	75.169	1.0909		887
Synonymous	-0.969	92	80.9	1.14	0.00000468	688
Loss of Function	0.483	3	4.05	0.741	1.70e-7	54

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000151	0.000151
Ashkenazi Jewish	0.00	0.00
East Asian	0.000167	0.000167
Finnish	0.0000464	0.0000464
European (Non-Finnish)	0.0000890	0.0000794
Middle Eastern	0.000167	0.000167
South Asian	0.000131	0.000131
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.0781

Intolerance Scores

• loftool: 0.920
• rvis_EVS: 2.13
• rvis_percentile_EVS: 97.92

Haploinsufficiency Scores

• pHI: 0.0747
• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0704

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Aadacl3

Gene ontology

• Cellular component: integral component of membrane
• Molecular function: carboxylic ester hydrolase activity