AAMDC

adipogenesis associated Mth938 domain containing

Basic information

Region (hg38): 11:77821109-77918432

Previous symbols: [ "C11orf67" ]

Links

ENSG00000087884 ∙ NCBI:28971 ∙ ∙ HGNC:30205 ∙ Uniprot:Q9H7C9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the AAMDC gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the AAMDC gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			2			2
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)				1		1
splice region						0
non coding			21	1		22
Total	0	0	23	2	0

Variants in AAMDC

This is a list of pathogenic ClinVar variants found in the AAMDC region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-77842549-G-C		not specified	Uncertain significance (May 05, 2023)
11-77869729-C-T		not specified	Uncertain significance (Apr 19, 2024)
11-77869770-G-C		not specified	Uncertain significance (Nov 15, 2021)
11-77878963-G-T		not specified	Uncertain significance (May 24, 2024)
11-77878990-G-C		not specified	Uncertain significance (Oct 03, 2022)
11-77879019-C-T		not specified	Uncertain significance (Aug 26, 2022)
11-77879064-C-T		not specified	Uncertain significance (Dec 15, 2023)
11-77879076-C-A		not specified	Uncertain significance (Jun 24, 2022)
11-77879077-G-A		not specified	Uncertain significance (Mar 25, 2024)
11-77879116-C-G		not specified	Uncertain significance (May 31, 2023)
11-77883853-G-A		not specified	Uncertain significance (May 02, 2024)
11-77883873-C-T		not specified	Uncertain significance (Sep 29, 2023)
11-77891335-T-A		not specified	Uncertain significance (Feb 23, 2023)
11-77891363-T-C		not specified	Uncertain significance (Apr 01, 2024)
11-77891405-G-A		not specified	Uncertain significance (Feb 27, 2024)
11-77891428-G-A		not specified	Uncertain significance (May 15, 2023)
11-77891459-G-A		not specified	Uncertain significance (Jan 03, 2024)
11-77891462-T-C		not specified	Uncertain significance (Nov 08, 2022)
11-77891718-C-T		not specified	Uncertain significance (May 26, 2024)
11-77891739-T-C		not specified	Uncertain significance (Oct 03, 2023)
11-77891764-T-C		not specified	Uncertain significance (Sep 17, 2021)
11-77891772-C-T		not specified	Uncertain significance (Aug 15, 2023)
11-77891775-G-A		not specified	Uncertain significance (May 18, 2023)
11-77891776-G-A		not specified	Uncertain significance (Dec 28, 2023)
11-77891791-G-C		not specified	Uncertain significance (Sep 21, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
AAMDC	protein_coding	protein_coding	ENST00000526415	3	97324

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000227	0.164	125639	1	105	125745	0.000422

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.127	68	65.1	1.04	0.00000314	777
Missense in Polyphen		34	28.989	1.1729		347
Synonymous	-0.715	27	22.7	1.19	9.71e-7	248
Loss of Function	-0.385	8	6.91	1.16	3.79e-7	73

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000178	0.000178
Ashkenazi Jewish	0.00	0.00
East Asian	0.000870	0.000870
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000123	0.000123
Middle Eastern	0.000870	0.000870
South Asian	0.00232	0.00229
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May play a role in preadipocyte differentiation and adipogenesis. {ECO:0000250}.

Recessive Scores

• pRec: 0.113

Intolerance Scores

• rvis_EVS: 0.28
• rvis_percentile_EVS: 71.08

Haploinsufficiency Scores

• pHI: 0.0769
• hipred: Y
• hipred_score: 0.514
• ghis: 0.499

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Aamdc

Gene ontology

• Biological process: positive regulation of fat cell differentiation
• Cellular component: cytoplasm
• Molecular function: protein binding