ABCB10

ATP binding cassette subfamily B member 10, the group of ATP binding cassette subfamily B

Basic information

Region (hg38): 1:229516582-229558707

Links

ENSG00000135776 ∙ NCBI:23456 ∙ OMIM:605454 ∙ HGNC:41 ∙ Uniprot:Q9NRK6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ABCB10 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ABCB10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1	1	2
missense			57		1	58
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding					1	1
Total	0	0	57	1	3

Variants in ABCB10

This is a list of pathogenic ClinVar variants found in the ABCB10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-229518223-T-C		not specified	Uncertain significance (Sep 17, 2021)
1-229518253-G-C		not specified	Uncertain significance (Feb 08, 2023)
1-229518315-G-A		not specified	Uncertain significance (Nov 14, 2024)
1-229518345-G-A		not specified	Uncertain significance (Mar 01, 2023)
1-229518367-C-T		not specified	Uncertain significance (Sep 22, 2023)
1-229521614-G-A		not specified	Uncertain significance (Sep 24, 2024)
1-229525993-G-A		not specified	Uncertain significance (Dec 14, 2022)
1-229526010-T-C		not specified	Uncertain significance (Aug 17, 2022)
1-229526029-T-C		not specified	Uncertain significance (Dec 25, 2024)
1-229527287-T-C		not specified	Uncertain significance (Sep 27, 2024)
1-229527306-T-C		not specified	Uncertain significance (Jan 09, 2025)
1-229527317-GAGGAA-G			Benign (Jan 08, 2018)
1-229530290-C-T			Likely benign (Mar 01, 2022)
1-229530295-T-C		not specified	Uncertain significance (Oct 12, 2021)
1-229530325-C-T		not specified	Uncertain significance (Nov 21, 2023)
1-229530336-G-T		not specified	Uncertain significance (May 01, 2022)
1-229530361-T-C		not specified	Uncertain significance (Feb 15, 2025)
1-229530403-C-A		not specified	Uncertain significance (Jun 17, 2024)
1-229531637-G-T			Benign (Jan 08, 2018)
1-229531689-G-A		not specified	Uncertain significance (May 16, 2024)
1-229531713-G-A		not specified	Uncertain significance (Oct 25, 2023)
1-229539513-C-T		not specified	Uncertain significance (Dec 12, 2023)
1-229539579-C-T		not specified	Uncertain significance (Jul 25, 2023)
1-229540626-G-A		not specified	Uncertain significance (Jul 20, 2021)
1-229540646-G-C		not specified	Uncertain significance (Feb 07, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ABCB10	protein_coding	protein_coding	ENST00000344517	13	42114

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
2.91e-8	0.919	125695	0	53	125748	0.000211

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.35	272	342	0.794	0.0000198	4613
Missense in Polyphen		83	125.72	0.66019		1476
Synonymous	-0.502	139	132	1.06	0.00000747	1631
Loss of Function	1.81	16	25.9	0.617	0.00000132	332

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000391	0.000391
Ashkenazi Jewish	0.00	0.00
East Asian	0.000544	0.000544
Finnish	0.00	0.00
European (Non-Finnish)	0.000256	0.000255
Middle Eastern	0.000544	0.000544
South Asian	0.000131	0.000131
Other	0.000163	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May mediate critical mitochondrial transport functions related to heme biosynthesis. {ECO:0000250}.
• Pathway: ABC transporters - Homo sapiens (human);Transport of small molecules;ABC-family proteins mediated transport;Mitochondrial ABC transporters (Consensus)

Recessive Scores

• pRec: 0.143

Intolerance Scores

• loftool: 0.238
• rvis_EVS: -0.13
• rvis_percentile_EVS: 43.91

Haploinsufficiency Scores

• pHI: 0.262
• hipred: N
• hipred_score: 0.267
• ghis: 0.582

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.665

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Abcb10
• Phenotype: liver/biliary system phenotype; embryo phenotype; hematopoietic system phenotype; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); integument phenotype (the observable morphological and physiological characteristics of the skin and its associated structures, such as the hair, nails, sweat glands, sebaceous glands and other secretory glands that are manifested through development and lifespan); homeostasis/metabolism phenotype; cellular phenotype

Zebrafish Information Network

• Gene name: abcb10
• Affected structure: nucleate erythrocyte
• Phenotype tag: abnormal
• Phenotype quality: decreased amount

Gene ontology

• Biological process: mitochondrial transport;transmembrane transport
• Cellular component: mitochondrial inner membrane;integral component of membrane;integral component of mitochondrial membrane
• Molecular function: transporter activity;ATP binding;ATPase activity, coupled to transmembrane movement of substances;protein homodimerization activity