ABHD16B

abhydrolase domain containing 16B, the group of Abhydrolase domain containing

Basic information

Region (hg38): 20:63861498-63862988

Previous symbols: [ "C20orf135" ]

Links

ENSG00000183260 ∙ NCBI:140701 ∙ OMIM:620190 ∙ HGNC:16128 ∙ Uniprot:Q9H3Z7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ABHD16B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ABHD16B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			73	1		74
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	73	1	0

Variants in ABHD16B

This is a list of pathogenic ClinVar variants found in the ABHD16B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
20-63861559-G-A		not specified	Uncertain significance (Aug 14, 2024)
20-63861560-T-G		not specified	Uncertain significance (Jun 17, 2024)
20-63861608-C-G		not specified	Uncertain significance (Apr 06, 2024)
20-63861652-G-A		not specified	Uncertain significance (Aug 31, 2022)
20-63861655-C-T		not specified	Uncertain significance (Jan 26, 2025)
20-63861665-G-C		not specified	Uncertain significance (Sep 16, 2021)
20-63861667-C-T		not specified	Uncertain significance (Jul 27, 2024)
20-63861668-G-A		not specified	Uncertain significance (Oct 04, 2024)
20-63861676-A-G		not specified	Likely benign (Jan 20, 2023)
20-63861682-C-T		not specified	Uncertain significance (Jun 30, 2023)
20-63861683-G-A		not specified	Uncertain significance (Nov 08, 2022)
20-63861691-A-G		not specified	Uncertain significance (Oct 07, 2024)
20-63861698-C-T		not specified	Uncertain significance (Nov 15, 2021)
20-63861715-G-A		not specified	Uncertain significance (Feb 18, 2025)
20-63861730-G-C		not specified	Uncertain significance (Feb 09, 2025)
20-63861740-T-C		not specified	Uncertain significance (Jan 26, 2023)
20-63861745-G-A		not specified	Uncertain significance (Jan 23, 2024)
20-63861812-G-A		not specified	Uncertain significance (Mar 16, 2024)
20-63861827-A-C		not specified	Uncertain significance (Jun 18, 2021)
20-63861845-T-C		not specified	Uncertain significance (Mar 29, 2024)
20-63861896-T-A		not specified	Uncertain significance (Dec 11, 2024)
20-63861898-A-C		not specified	Uncertain significance (Oct 28, 2024)
20-63861899-C-T		not specified	Uncertain significance (Oct 06, 2021)
20-63861901-C-T		not specified	Uncertain significance (Sep 13, 2023)
20-63861902-G-A		not specified	Uncertain significance (Jan 31, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ABHD16B	protein_coding	protein_coding	ENST00000369916	1	1776

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0000744	0.764	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.509	290	315	0.919	0.0000249	2876
Missense in Polyphen		119	116.6	1.0206		1133
Synonymous	1.40	134	156	0.858	0.0000136	1029
Loss of Function	1.10	8	12.1	0.660	6.13e-7	116

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Haploinsufficiency Scores

• pHI: 0.178
• hipred: N
• hipred_score: 0.272
• ghis: 0.479

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Abhd16b

Gene ontology

• Molecular function: hydrolase activity