ABRACL

ABRA C-terminal like

Basic information

Region (hg38): 6:139028745-139043302

Previous symbols: [ "C6orf115" ]

Links

ENSG00000146386 ∙ NCBI:58527 ∙ ∙ HGNC:21230 ∙ Uniprot:Q9P1F3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ABRACL gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ABRACL gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			6			6
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	6	0	0

Variants in ABRACL

This is a list of pathogenic ClinVar variants found in the ABRACL region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-139034167-G-A		not specified	Uncertain significance (Aug 02, 2021)
6-139034179-G-C		not specified	Uncertain significance (Mar 07, 2025)
6-139034206-C-T		not specified	Uncertain significance (Oct 27, 2023)
6-139042721-G-A		not specified	Uncertain significance (Feb 28, 2023)
6-139042726-T-A		not specified	Uncertain significance (Jan 27, 2022)
6-139042737-G-A		not specified	Uncertain significance (Jan 03, 2024)
6-139042769-A-G		not specified	Uncertain significance (May 27, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ABRACL	protein_coding	protein_coding	ENST00000367660	2	14621

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.242	0.653	124790	0	4	124794	0.0000160

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.407	38	45.7	0.831	0.00000251	524
Missense in Polyphen		9	12.222	0.73638		163
Synonymous	-0.162	18	17.1	1.05	9.18e-7	162
Loss of Function	1.17	1	3.30	0.303	2.36e-7	40

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000646	0.0000646
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000177	0.0000177
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.0975

Intolerance Scores

• rvis_EVS: 0.04
• rvis_percentile_EVS: 56.25

Haploinsufficiency Scores

• pHI: 0.733
• hipred: Y
• hipred_score: 0.517
• ghis: 0.630

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Low	Medium
Primary Immunodeficiency	Medium	Low	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Abracl

Gene ontology

• Biological process: regulation of actin filament-based process